Job Description Q9Y5R4 Confidence 99.96% Date Tue Apr 3 14:35:09 BST 2012 Rank 6 Aligned Residues 258 % Identity 16% Template c3ocjA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis Resolution 1.39 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	Q	P	P	L	A	G	L	S	S	A	I	E	L	V	S	H	W	T	G	V	F	E	K	R	G	I	P	E	A	R	E	S	S	E	Y	I	V	A	H	V	L	G	A	K	T	F	Q	S	L	R	P	A	L	W	T	Q	P	L	T	S	Q	Q	L	Q	C	I	R	E	L	S	S	R	R	L	Q	R	M	P
Query Conservation
Alig confidence																													.																																										.	.	.
Template Conservation																													.																																										.	.	.
Template Sequence		S	P	S	S	H	R	A	A	S	A	D	L	A	G	X	V	R	Q	A	R	Q	R	I	L	L	Q	G	.	N	V	P	G	F	D	V	A	R	Q	I	E	L	L	H	G	L	A	E	S	E	L	G	R	F	L	L	L	Y	R	G	L	N	A	E	W	T	H	R	L	V	.	.	.	T	H	Q	P	G	S	G	A
Template Known Secondary structure							S																						.		B	T	T	B															S										S	S											.	.	.				T	T		S
Template Predicted Secondary structure																													.																																										.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		V	Q	Y	I	L	G	E	W	D	F	Q	G	L	S	L	R	M	V	P	P	V	F	I	P	R	P	E	T	E	E	L	V	E	W	V	L	E	E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	.	S	Q	L	P	Q	S	R	V	I	A
Query Conservation																																																																							.
Alig confidence					.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.																					.
Template Conservation					.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Sequence		L	A	P	.	.	.	.	.	.	L	E	R	V	F	Y	E	R	L	P	A	V	L	A	T	R	E	R	H	G	H	F	R	R	A	L	Q	R	H	L	R	.	.	.	.	.	.	.	.	.	P	G	C	V	V	A	S	V	P	C	G	W	X	S	E	L	L	A	L	D	Y	S	A	C	P	G	V	Q	L	V	G
Template Known Secondary structure					.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	T	T						T	T		T	T						T	S			T	T		T	T
Template Predicted Secondary structure					.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E
Query Conservation
Alig confidence																																						.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	Y	D	P	E	A	L	D	G	A	T	R	L	A	A	G	H	A	L	A	G	Q	I	T	L	H	R	Q	D	A	W	K	L	D	T	.	.	.	.	.	R	E	G	Y	D	L	L	T	S	N	G	L	N	I	Y	E	P	D	D	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S													T	T	S	T	T	G	G	G								G	G	G				.	.	.	.	.		S									S	S	G	G	G							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.																																								.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	R	H	P	E	L	V	S	S	W	L	Q	S
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	V	T	E	L	Y	R	R	F	W	Q	A	L	K	P	G	G	A	L	V	T	S	F	L	T	P	P	P	A	L	S	P	D	S	P	W	D	X	Q	A	I	D	P	H	D	L	Q	L	Q	Q	L	V	F	T	R	L	I	Q	P	R	W	N	A	L	R	T	H	A	Q	T	R	A	Q	L	E	E
Template Known Secondary structure		.	.	.	.	.																											T	T	T		T	T					G	G	G	S															T	T			S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	D	L	Y	L	N	L	V	A	V	R	R	D	F	C	G	R	P	R	F	L	H	I	R	R	S	G
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	A	G	F	T	D	L	R	F	E	D	D	R	A	R	L	F	P	T	V	I	A	R	K	P	A
Template Known Secondary structure		.	.	.	T	T										T	T	S	S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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