Job Description Q9Y5R4 Confidence 97.84% Date Tue Apr 3 14:35:09 BST 2012 Rank 310 Aligned Residues 156 % Identity 12% Template c3lx6B_ PDB info PDB header:transferase Chain: B: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: structure of probable cytosine-specific methyltransferase from2 shigella flexneri Resolution 2.29 Å

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		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																									.																									.	.	.																									.	.	.	.	.
Template Conservation																									.																									.	.	.
Template Sequence		H	H	P	H	Y	A	F	R	F	I	D	L	F	A	G	I	G	G	I	R	R	G	F	.	E	S	I	G	G	Q	C	V	F	T	S	E	W	N	K	H	A	V	R	T	Y	K	A	N	.	.	.	H	Y	C	D	P	A	T	H	H	F	N	E	D	I	R	D	I	T	L	S	H	Q	E	G	V	S	D	E	A
Template Known Secondary structure		S	T	T			S							T		T	T	T							.			T	T																			T	T	.	.	.	S				T	T	T					S	S	T						T	T		S	S
Template Predicted Secondary structure																									.																									.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
										230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.						.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																			.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																			.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	.	.	.	.	.	D
Query Conservation		.	.	.	.	.	.	.	.																																																																			.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.											.					.							.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.											.					.
Template Sequence		A	A	E	H	I	R	Q	H	I	P	E	H	D	V	L	L	A	G	F	P	C	Q	P	F	S	L	A	A	.	.	.	.	.	.	.	.	C	D	T	Q	G	T	L	.	.	.	.	.	.	.	.	.	F	F	D	V	V	R	I	I	D	A	.	R	R	P	A	.	X	F	V	L	E	N	V	K	N	L	K	S
Template Known Secondary structure										S				S												T	T			.	.	.	.	.	.	.	.	G	G	G	T	T	S		.	.	.	.	.	.	.	.	.											.				S	.								G	G	G	G	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.											.					.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.									.	.	.	.	.	190	.										.	.	.	.	.	.	.	.	200	.		.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.															.	.	.	330	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	R	D	F	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	R	F	L	H	I
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	D	K	G	K	T	F	R	I	I	X	Q	T	L	D	E	L	G	Y	D	V	A	D	A	E	D	N	G	P	D	D	P	K	I	I	D	G	K	H	F	L	P	Q	H	R	E	R	I	V	L	V
Template Known Secondary structure		G	G	G	G														T				T	T	S	S			S	S	S		T	T				G	G	G	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions