Job Description Q9Y5R4 Confidence 97.26% Date Tue Apr 3 14:35:09 BST 2012 Rank 322 Aligned Residues 130 % Identity 15% Template c3lkzB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Resolution 2.00 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	R	W	L	V	E	R	R	F	L	E	P	V	G	K	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	M	A	T	Q	K	R	V	Q	E	V	R	G	Y	T	K	G	G	.	.	.	.	.	.	.	.	.	.	P	G	H	E	E	P	Q	L	V	Q	S	Y	G	W	N	I	V	T	M	K	S	G	V
Template Known Secondary structure									T	T	S											T		T	T								T	T		T	T											S	.	.	.	.	.	.	.	.	.	.	T	T	S								B	T	T	G	G	G						S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.											.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		227	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.		.	.	.	.	300	.
Predicted Secondary structure					.	.	.																																																												.								.
Query SS confidence					.	.	.																																																												.								.
Query Sequence		H	L	P	.	.	.	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	.	G	S	I	F	L	E	V	.	D	P	R	H	P	E
Query Conservation					.	.	.																																																												.								.
Alig confidence					.	.	.										.	.	.	.	.	.	.	.												.							.	.	.	.	.	.	.	.	.	.	.														.								.
Template Conservation																	.	.	.	.	.	.	.	.												.							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	F	Y	R	P	S	E	C	C	D	T	L	L	C	.	.	.	.	.	.	.	.	D	I	G	E	S	S	S	S	A	E	V	.	E	E	H	R	T	I	.	.	.	.	.	.	.	.	.	.	.	R	V	L	E	M	V	E	D	W	L	H	R	G	P	R	E	F	C	V	K	V	L	C	P	Y	M	P	K
Template Known Secondary structure			T	T	S	S						S					.	.	.	.	.	.	.	.							S					.							.	.	.	.	.	.	.	.	.	.	.											T	T										S		T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.												.							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.												.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		302	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	S	S	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	E	K	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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