Job Description Q9Y5R4 Confidence 58.73% Date Tue Apr 3 14:35:09 BST 2012 Rank 472 Aligned Residues 70 % Identity 20% Template c3k1qA_ PDB info PDB header:virus Chain: A: PDB Molecule:vp1, the protein that forms the mrna-capping PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics Resolution 4.50 Å

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		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S
Query Conservation
Alig confidence																				.	.																											.	.	.	.	.	.
Template Conservation																				.	.																											.	.	.	.	.	.
Template Sequence		A	H	L	L	D	L	G	T	G	P	E	C	R	I	L	S	L	I	.	.	P	P	T	L	Q	V	T	M	S	D	S	R	P	C	A	E	L	M	A	S	F	D	P	A	L	T	.	.	.	.	.	.	A	Y	V	Q	G	D	Y	S	T	A	A	F	W	N	G	I	R	C	D	S	A	T	A	I	F	T
Template Known Secondary structure								S			T	T		T					S	.	.		T	T									S				S	S	S	S	S			T	T	T		.	.	.	.	.	.					S		T	T	S	S	S		G	G	G				S						S
Template Predicted Secondary structure																				.	.																											.	.	.	.	.	.
Template SS confidence
		829	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.			.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.							.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions