Job Description Q9Y5R4 Confidence 97.56% Date Tue Apr 3 14:35:09 BST 2012 Rank 316 Aligned Residues 126 % Identity 15% Template c3evaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase ns5; PDBTitle: crystal structure of yellow fever virus methyltransferase complexed2 with s-adenosyl-l-homocysteine Resolution 1.50 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																															.	.	.	.	.	.																											.
Query SS confidence																																															.	.	.	.	.	.																											.
Query Sequence		E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	S	R	V	I	A	V	D	K	.	.	.	.	.	.	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	.	D	M
Query Conservation																																															.	.	.	.	.	.																											.
Alig confidence																																															.	.	.	.	.	.					.	.	.	.	.	.	.	.															.
Template Conservation																																																									.	.	.	.	.	.	.	.
Template Sequence		K	L	R	W	F	H	E	R	G	Y	V	K	L	E	G	R	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	A	A	A	Q	K	E	V	S	G	V	K	G	F	T	L	G	R	D	G	H	E	K	P	M	N	.	.	.	.	.	.	.	.	V	Q	S	L	G	W	N	I	I	T	F	K	D	K	T	D	I
Template Known Secondary structure									T	T	S	S										T		T	T									T	S	T	T												T	T							.	.	.	.	.	.	.	.			B	T	T	G	G	G						S			T
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.		.	.
Predicted Secondary structure																																																																				.											.
Query SS confidence																																																																				.											.
Query Sequence		T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	.	K	D	S	G	S	I	F	L	E	V	.	D	P
Query Conservation																																																																				.											.
Alig confidence				.	.	.	.	.	.												.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.												.											.
Template Conservation				.	.	.	.	.	.												.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	R	.	.	.	.	.	.	L	E	P	V	K	C	D	T	L	L	C	.	.	.	.	.	.	.	.	D	I	G	E	S	S	S	S	S	V	T	E	G	E	R	T	.	.	.	.	.	.	.	.	.	.	.	.	V	R	V	L	D	T	V	E	K	W	L	A	C	G	V	D	N	F	C	V	K	V	L	A	P
Template Known Secondary structure		T	S	.	.	.	.	.	.	S						S					.	.	.	.	.	.	.	.							S										.	.	.	.	.	.	.	.	.	.	.	.												T	T			S							S		T
Template Predicted Secondary structure				.	.	.	.	.	.												.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.							.	.	.	.	.	140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.													.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	P	E	L	V	S	S	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	M	P	D	V	L	E	K	L
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions