Job Description Q9Y5R4 Confidence 99.59% Date Tue Apr 3 14:35:09 BST 2012 Rank 119 Aligned Residues 194 % Identity 16% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		109	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure							.	.	.	.																				.	.	.	.
Query SS confidence							.	.	.	.																				.	.	.	.
Query Sequence		P	V	Q	Y	I	.	.	.	.	L	G	E	W	D	F	Q	G	L	S	L	R	M	V	P	P	V	F	I	.	.	.	.	P	R	P	E	T	E	E	L	V	E	W	V	L	E	E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q
Query Conservation							.	.	.	.																				.	.	.	.
Alig confidence							.	.	.	.																				.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	Q	H	L	T	I	F	E	S	D	P	K	G	P	W	G	T	V	X	A	L	D	G	C	I	Q	V	T	D	Y	D	E	F	V	Y	H	E	V	L	G	H	T	S	L	C	S	.	.	.	.	.	.	.	.	.	H	P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H
Template Known Secondary structure		S	S	S									T	T	S	S								T	T						T	T	T														T	T	.	.	.	.	.	.	.	.	.	S	S											T	T	S							T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.										.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		L	P	Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	.	.	.	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S
Query Conservation																													.	.	.
Alig confidence																													.	.	.																					.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	V	E	H	C	D	L	V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F	V	R	Q	T	P	.	.	D	N	T	Y	D	V	V	I	I	D	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T									S																	G	G	G	G		T	T						S								T	S		.	.	T	T										S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.						.	.	.	.	.	330
Predicted Secondary structure																																										.	.																												.	.	.	.	.
Query SS confidence																																										.	.																												.	.	.	.	.
Query Sequence		Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	.	.	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	R	D	F	.	.	.	.	.	C	G	R	P	R	F
Query Conservation																																										.	.																												.	.	.	.	.
Alig confidence		.								.	.	.	.	.	.	.	.																									.	.																												.	.	.	.	.
Template Conservation		.								.	.	.	.	.	.	.	.
Template Sequence		.	D	P	A	S	K	L	F	.	.	.	.	.	.	.	.	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V	Q	Y	A	L	X	H	V	P	T	Y	P	C	G	S	I	G	T
Template Known Secondary structure		.						S	S	.	.	.	.	.	.	.	.																									T	T	T																T		S										T	T	S	T	T	S
Template Predicted Secondary structure		.								.	.	.	.	.	.	.	.
Template SS confidence
			179	180	.	.	.	.	.									.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	I	R	R	S	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	C	S	K	K	A	G
Template Known Secondary structure						S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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