Job Description Q9Y5R4 Confidence 99.71% Date Tue Apr 3 14:35:09 BST 2012 Rank 72 Aligned Residues 164 % Identity 20% Template c2yvlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus Resolution 2.20 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.										.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.
Query Sequence		I	L	G	E	W	D	F	Q	G	L	S	L	R	M	V	P	P	V	F	I	P	R	P	E	T	E	E	L	V	E	W	V	L	E	.	.	.	.	.	.	.	.	.	E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q
Query Conservation																																				.	.	.	.	.	.	.	.	.
Alig confidence						.	.							.	.	.																				.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation						.	.							.	.	.																																																															.	.
Template Sequence		V	I	G	K	.	.	P	E	G	V	K	I	.	.	.	N	G	F	E	V	Y	R	P	T	L	E	E	I	I	L	L	G	F	E	R	K	T	Q	I	I	Y	P	K	D	S	F	Y	I	A	L	K	L	N	L	N	K	E	K	R	V	L	E	F	G	T	G	S	G	A	L	L	A	V	L	S	E	V	.	.	A
Template Known Secondary structure		T	T	T		.	.		T	T				.	.	.	T	T																S			S	S															T	T			T	T									T	T	S										.	.	S
Template Predicted Secondary structure						.	.							.	.	.																																																															.	.
Template SS confidence
		41	.	.	.			.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A
Query Conservation
Alig confidence																																										.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	V	W	T	F	E	A	V	E	E	F	Y	K	T	A	Q	K	N	L	K	K	F	N	L	G	K	N	V	K	F	F	N	V	D	F	K	D	A	E	.	.	.	.	V	P	E	G	I	F	H	A	A	F	V	D	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	W	H	Y
Template Known Secondary structure		S							S	S														T	T			T	T						S		T	T	T	S		.	.	.	.			T	T		B	S						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G
Template Predicted Secondary structure																																										.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.																		.	.	170	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.												.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.												.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	V	H	K	S	L	M	E	G	A	P	V	G	F	L	L	P	T	.	.	A	N	Q	V	I	K	L	L	E	S	I	.	E	N	Y	F	G	N	L	E	V	V
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.							B		T	T								S	S	.	.												.	T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.												.
Template SS confidence
		173															.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions