Job Description Q9Y5R4 Confidence 97.02% Date Tue Apr 3 14:35:09 BST 2012 Rank 325 Aligned Residues 151 % Identity 20% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.													.	.	.	.	.	.	190				.	.	.	.	.	.	.	.												.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	S	R	V	I	A	V	D	.	.	.	K	R	E	A	A	I	S	L	.	.	.	.	.	.	.	.	.	.	.	T	H	E	N	A	Q	R	L	R	L	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.									.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P
Template Known Secondary structure			S	S	S							S			T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T				S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
												209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		.	.	.	.	.	.	.	.	.	.	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	.	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I
Query Conservation		.	.	.	.	.	.	.	.	.	.																							.
Alig confidence		.	.	.	.	.	.	.	.	.	.																							.										.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	G	C	H	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	.	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure			S																	S						G	G	G	S		G	G	G	T	T									.	S	S		T	T	T		G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210																							.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	R	D	F	C	G	R	P	R	F	L	H	I	R	R	S
Query Conservation
Alig confidence																		.	.	.														.	.	.					.
Template Conservation																		.	.	.														.	.	.					.
Template Sequence		F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	.	.	.	F	T	S	A	G	F	V	R	R	G	L	Q	E	.	.	.	A	G	F	T	.	M	Q	K	R	K	G	F	G	R	K	R	E	M	L	C	G	V	M	E
Template Known Secondary structure																		.	.	.	S													.	.	.		T			.							S	T	T
Template Predicted Secondary structure																		.	.	.														.	.	.					.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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