Job Description Q9Y5R4 Confidence 99.34% Date Tue Apr 3 14:35:09 BST 2012 Rank 241 Aligned Residues 200 % Identity 12% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		109	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		P	V	Q	Y	I	L	G	.	E	W	D	F	Q	G	L	S	L	R	M	V	P	P	V	F	I	P	R	P	E	T	E	E	L	V	E	W	V	L	E	E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	S	R	V	I
Query Conservation									.
Alig confidence									.																																	.	.	.	.	.
Template Conservation																																										.	.	.	.	.
Template Sequence		D	Y	Q	D	V	I	V	F	Q	S	A	T	Y	G	K	V	L	V	L	D	G	V	I	Q	L	T	E	R	D	E	C	A	Y	Q	E	X	I	T	H	L	.	.	.	.	.	P	L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D
Template Known Secondary structure		S	S									S	S	S		B					T	T						S	T	T									T			.	.	.	.	.			T	T	S	S	S								S		S	S	S							T	T		T	T
Template Predicted Secondary structure																																										.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																						.	.	.
Query SS confidence																						.	.	.
Query Sequence		A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	.	.	.	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L
Query Conservation																						.	.	.
Alig confidence																						.	.	.																					.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.																										.	.	.	.	.	.	.	.	.	.
Template Sequence		X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	.	.	E	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		T	T	T	G	G	G	T	T		T	T						S								S	S		.	.	S	S												S	S	S	G	G	G	G	G	G	S			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.							.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																											.	.	.	.	.	.
Query SS confidence																																			.	.																											.	.	.	.	.	.
Query Sequence		D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	.	.	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	R	D	.	.	.	.	.	.	F	C	G	R	P	R	F	L	H	I	R	R	S
Query Conservation																																			.	.																											.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.	.																	.										.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q	A	E	S	L	W	L	H	X	D	I	I	E	D	I	V	S	N	C	R	E	I	.	F	K	G	S	V	N	Y	A	W	T	S	V	P	T	Y	P	S	G	V	I	G	F	X	L	C	S	T	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																						T	T	T																.		S	S										T	T	S	G	G	G										S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template SS confidence
														217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		337	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		284	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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