Job Description Q9Y5R4 Confidence 97.28% Date Tue Apr 3 14:35:09 BST 2012 Rank 321 Aligned Residues 138 % Identity 15% Template c2px2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:genome polyprotein [contains: capsid protein c PDBTitle: crystal structure of the murray valley encephalitis virus2 ns5 2'-o methyltransferase domain in complex with sah3 (monoclinic form 1) Resolution 2.00 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.							.	.	.
Predicted Secondary structure																																																																					.	.			.	.	.	.	.	.
Query SS confidence																																																																					.	.			.	.	.	.	.	.
Query Sequence		E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	P	Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	.	.	I	I	.	.	.	.	.	.	H	L	D
Query Conservation																																																																					.	.			.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.			.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	R	W	L	V	E	R	R	F	V	Q	P	I	G	K	V	V	D	L	G	C	G	R	G	G	W	S	Y	Y	A	A	T	M	K	N	V	Q	E	V	R	G	Y	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	P	G	H	E	E	P	M	L	M	Q	S	Y	G	W	N	I	V	T
Template Known Secondary structure									T	T	S											T		T	T	S							T	T	S	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	T	T	S								S	T	T	G	G	G
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.		.
Predicted Secondary structure																																																																								.								.
Query SS confidence																																																																								.								.
Query Sequence		M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	.	G	S	I	F	L	E	V	.	D
Query Conservation																																																																								.								.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.								.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	S	G	V	D	V	F	Y	K	P	S	E	I	S	D	T	L	L	C	D	I	G	E	S	S	P	S	A	E	I	E	E	Q	R	T	L	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	M	V	S	D	W	L	S	R	G	P	K	E	F	C	I	K	I	L	C
Template Known Secondary structure					S			G	G	G	S						S											S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T			S							S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	Y	M	P	K	V	I	E	K	L	E	S	L	Q	R	R	F	G	G	G	L	V	R
Template Known Secondary structure		T	T	S
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions