Job Description Q9Y5R4 Confidence 99.77% Date Tue Apr 3 14:35:09 BST 2012 Rank 43 Aligned Residues 165 % Identity 17% Template c2pwyB_ PDB info PDB header:transferase Chain: B: PDB Molecule:trna (adenine-n(1)-)-methyltransferase; PDBTitle: crystal structure of a m1a58 trna methyltransferase Resolution 1.70 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	G	E	W	D	F	Q	G	L	S	L	R	M	V	P	P	V	F	I	P	R	P	E	T	E	E	L	V	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.
Template Sequence		L	L	E	A	G	P	G	G	V	V	R	T	H	L	G	E	E	L	S	V	H	R	P	T	L	E	E	Y	L	L	H	M	K	R	S	A	T	P	T	Y	P	K	D	A	S	A	M	V	T	L	L	D	.	.	.	.	.	.	.	L	A	P	G	M	R	V	L	E	A	G	T	G	S	G	G	L	T	L	F	L
Template Known Secondary structure							T	T						T	T																		S			S	S															T	T	.	.	.	.	.	.	.			T	T									T	T	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		178	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		L	S	Q	L	.	P	Q	S	R	V	I	A	V	D	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R
Query Conservation						.
Alig confidence						.																																											.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	A	V	G	E	K	G	L	V	E	S	Y	E	A	R	P	H	H	L	A	Q	A	E	R	N	V	R	A	F	W	Q	V	E	N	V	R	F	H	L	G	K	L	E	E	A	E	.	.	.	.	L	E	E	A	A	Y	D	G	V	A	L	D	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T	T	S							S																										S		G	G	G			.	.	.	.			T	T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.					.	160	.	.	.	.	.	.	.	.	.	170	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	R	H	P	E	L	V	S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R
Query Conservation
Alig confidence		.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation		.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		.	.	E	P	W	K	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	A	A	L	A	L	K	P	D	R	F	L	V	A	Y	L	P	N	.	.	I	T	Q	V	L	E	L	V	R	A	A	E	A	H	P	F	R	L	E	R	V	L
Template Known Secondary structure		.	.		G	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		S		.	.											G	G	G	T	T
Template Predicted Secondary structure		.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
				173	.	.	.	.	.															.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions