Job Description Q9Y5R4 Confidence 64.49% Date Tue Apr 3 14:35:09 BST 2012 Rank 439 Aligned Residues 90 % Identity 22% Template c2nvuB_ PDB info PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex Resolution 2.80 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																																								.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	V	F	I	P	R	P	E	T	E	E	L	V	E	W	V	L	E	E	V	A	Q	R	S	H	A	V	G	S	P	G	S	P	L	I	L	E	V	G	C	G	S	G	A	I	S	L	S	L	L	S	Q	L	.	.	.	P	Q	S	R	V	I	A	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.									.	.										.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		H	P	D	F	E	P	S	T	E	S	.	.	.	L	Q	F	L	L	D	T	C	K	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	V	I	G	A	G	G	.	.	L	G	C	E	L	L	K	N	L	A	L	S	G	F	R	Q	I	H	V	I	D	M	D	T	I	D	V	S	N	L	N	R	Q	F	L
Template Known Secondary structure			T	T					S			.	.	.							T			.	.	.	.	.	.	.	.	.	.	.	.	.							S	S	.	.											T	T	T											B			G	G	G	G	G	T		T	T
Template Predicted Secondary structure												.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
		2032	.	.	.	.	.	.	.	2040	.				.	.	.	.	.	.	.	.	2050														.	.	.	.	.	.	.	.			.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.
							191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	K	R	E	A	A	I	S	L	T	H	E	N	A	Q	R	L	R	L	Q	D	R	I	W	I	I	H	L	D	M	T	S	E	R	S	W	T	H	L	P	W	G	P	M	D	L	I	V	S
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																						.	.	.
Template Conservation																																												.	.	.
Template Sequence		F	R	P	K	D	I	G	R	P	K	A	E	V	A	A	E	F	L	N	D	R	V	P	N	C	N	V	V	P	H	F	N	K	I	Q	D	F	N	D	T	F	Y	.	.	.	R	Q	F	H	I	I	V	C
Template Known Secondary structure				G	G	G	T	T	S	B													S	T	T								S		G	G	G	S						.	.	.		T		S
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		2094	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.				.	.	.	.	2140	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions