Job Description Q9Y5R4 Confidence 87.06% Date Tue Apr 3 14:35:09 BST 2012 Rank 361 Aligned Residues 79 % Identity 16% Template c2hwkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:helicase nsp2; PDBTitle: crystal structure of venezuelan equine encephalitis2 alphavirus nsp2 protease domain Resolution 2.45 Å

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		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		T	H	L	P	W	G	P	M	D	L	I	V	S	N	P	.	.	P	Y	V	F	H	Q	D	M	E	Q	L	A	P	E	I	R	S	Y	E	D	P	A	A	L	D	G	G	E	E	G	M	D	I	I	T	H	I	L	A	L	A	P	R	L	L	K	D	S	G	S	I	F	L	E	V	D	P	R	H	P	E	L	V
Query Conservation																	.	.
Alig confidence																	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		I	P	G	D	V	P	K	Y	D	I	I	F	V	N	V	R	T	P	Y	K	Y	H	H	Y	Q	Q	C	E	D	H	A	I	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	M	L	T	K	K	A	C	L	H	L	N	P	G	G	T	C	V	S	.	I	G	Y	G	Y	A	D	R	A
Template Known Secondary structure		S		T	T	S																S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T					G	G	G										.							S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700																		.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.		720	.	.	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	W	L	Q	S	R	P	D	L	Y	L	N	L	V	A	V	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	S	I	I	G	A	I	A	R	Q	F	K	F	S	R	V	C	K
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions