Phyre 2 alignment of Q9Y5R4 with c1luaA_

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Job Description | Q9Y5R4
Confidence | 69.91% | Date | Tue Apr 3 14:35:09 BST 2012
Rank | 417 | Aligned Residues | 79
% Identity | 4% | Template | c1luaA_
PDB info | PDB header:oxidoreductase | Chain: A: PDB Molecule:methylene tetrahydromethanopterin dehydrogenase; | PDBTitle: structure of methylene-tetrahydromethanopterin dehydrogenase from2 methylobacterium extorquens am1 complexed with nadp
Resolution | 1.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |  | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | S | P | L | I | L | E | V | G | C | G | S | G | A | . | I | S | L | S | L | L | S | Q | L | P | Q | S | R | V | I | A | V | D | K | R | E | A | A | I | S | L | T | H | E | N | A | Q | R | L | R | L | Q | D | R | I | W | I | I | H | L | D | M | T | S | E | R | S | W | T | H | L | P | W | G | P | M | D | L | I | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template Sequence |  | K | G | K | K | A | V | V | L | A | G | T | G | P | V | G | M | R | S | A | A | L | L | A | G | E | G | A | E | V | V | L | C | G | R | K | L | D | K | A | Q | A | A | A | D | S | V | N | K | R | F | . | . | . | K | V | N | V | T | A | A | E | T | A | D | D | A | S | R | A | E | A | V | . | K | G | A | H | F | V | F
Template Known Secondary structure |  | T | T |  |  |  |  |  |  | T | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | T |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  | T | . | T | T |  | S |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . |  |  |  | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |  | . | . | 190 | . | . | . | .
|  | 238 | . | 240 | .
Predicted Secondary structure |  |  |  |  |
Query SS confidence |  |  |  |  |
Query Sequence |  | S | N | P | P
Query Conservation |  |  |  |  |
Alig confidence |  |  |  |  |
Template Conservation |  |  |  |  |
Template Sequence |  | T | A | G | A
Template Known Secondary structure |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |
Template SS confidence |  |  |  |  |
|  | 195 | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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