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Job DescriptionP20749
Confidence99.96%DateTue Apr 3 15:06:46 BST 2012
Rank24Aligned Residues212
% Identity20%Templatec3jxiA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   136...140.........150.........160....... ..170.........180 .........190.........200
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Query Sequence  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI. . . . YNNLRQTPLHLAV. . . ITTLPSVVRLLVTAGASPMA. . . . . . . .
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Template Sequence  RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP
Template Known Secondary structure  T
GGGGTTT

TTSGGGS
TTT


TS
BTTB
TTT
T

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   137..140.........150.........160.........170.........180.........190.........200.........210......
 
   201........210.........220.........230....... ..240.........250.........260... ..
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Query Sequence  . . . LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA. . . . . . . . . . RNYDGLTALHVAVNTECQETVQLLLE. . RG
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Template Sequence  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK
Template Known Secondary structure  B

SSSB
TT
TT

TT





SSS



S

S
SSTT

SS
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   217..220.........230.........240.........250.........260.........270.........280.........290......
 
   266...270.........280.........290.........300.........310.........320.........330.........340.....
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Query Sequence  ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP
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Template Sequence  QADLRRQDSRGNTVLHALVAIAD. . . . . . . . . . . . . . . . . NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP
Template Known Secondary structure 


TT


TTS



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TT

GGG


TTS

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   297..300.........310......... 320.........330.........340.........350.........
 
   346...350.........360....
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Query Sequence  LMVARSRRVIDILRGKATR
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Template Sequence  LMMAAKTGKIGIFQHIIRR
Template Known Secondary structure  TT
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   360.........370........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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