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Job DescriptionP20749
Confidence100.00%DateTue Apr 3 15:06:46 BST 2012
Rank4Aligned Residues204
% Identity19%Templatec3keaB_
PDB info PDB header:viral proteinChain: B: PDB Molecule:k1l; PDBTitle: structure function studies of vaccinia virus host-range protein k12 reveal a novel ankyrin repeat interaction surface for k1s function
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   125....130.........140.........150.........160.........170.........180.........190.........200....
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Query Sequence  IAMATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH
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Template Sequence  SKDTFKADVHGHSASYYAIADNNVRLVC. . . . TLLNAGALKNLLE. . NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK
Template Known Secondary structure  STTTT


TTS

TT
....TTGGGS

T..T

TTSSS
TT

TT


TT
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   20.........30.........40....... ..50.........60 .........70.........80.........90...
 
   205....210.........220.........230.........240.........250.........260.........270.........280....
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Query Sequence  GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV
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Template Sequence  GNTALYYAVDSGNXQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TVKLFVKKNWRLXFYGKTGWKTSFYHAV
Template Known Secondary structure  S

T
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GGGGG
SSSGGGS
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   94.....100........ .110.........120.........130......
 
   285....290.........300.........310.........320.........330.........340..... ....350.........360...
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Query Sequence  ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP. LMVARSRRVIDILRGKAT
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Template Sequence  XLNDVSIVSYFLSEIPS. TFDLAILLSCIHITIKNGHVDXXILLLDYXTSTNTNNSLLFIPDIKLAIDNKDIEXLQALFK
Template Known Secondary structure  TT
TTS
T.T


STTT
T
TT


B

TTT
TT
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   137..140.........150... ......160.........170.........180.........190.........200.........210.....
 
   364.....370..
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Query Sequence  RPASTSQPD
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Template Conservation           
Template Sequence  YDINIYSAN
Template Known Secondary structure  S
B
STTTT
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   216...220....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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