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Job DescriptionP20749
Confidence99.96%DateTue Apr 3 15:06:46 BST 2012
Rank29Aligned Residues229
% Identity20%Templatec2f37B_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   131........140.........150.........160... ......170.........180.... .....190..
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Query Sequence  ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR. . . . ELDIYNNLRQTPLHLAVITTL. . . . . . . . . . . . . . PSVVRLLV
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Template Sequence  PNRFDRDRLFNAVSRGVPEDLAGLPEYLSKTSKYLTDSEYTEGSTGKTCLXKAVLNLKDGVNACILPLLQIDRDSGNPQP
Template Known Secondary structure 
S


T
GGGGTTT

TTSGGGSBTTTTB
T
BTTB
TTT
SS
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   71........80.........90.........100.........110.........120.........130.........140.........150
 
   193......200.........210.........220.........230.........240.........250.........260.........270..
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Query Sequence  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD
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Template Sequence  LVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGA. . . . NVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDVV.
Template Known Secondary structure  GGG
B

STTTTT
BTT
TT
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TT



SGGG
TTSSSS

S
SSTT
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   151........160.........170.........180....... ..190.........200.........210.........220.....
 
   273......280.........290.........300.........310.........320.........330.........340.........350..
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Query Sequence  IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR
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Template Sequence  . SYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKE
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TT


TTS



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STT

GGG


TTS

T
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   226...230.........240.........250.........260.........270.........280.........290.........300....
 
   353......360.....
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Query Sequence  RVIDILRGKATRP
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Template Sequence  GKIEIFRHILQRE
Template Known Secondary structure  T
T
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   305....310.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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