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Job DescriptionP20749
Confidence100.00%DateTue Apr 3 15:06:46 BST 2012
Rank6Aligned Residues226
% Identity20%Templatec2fo1E_
PDB info PDB header:gene regulation/signalling protein/dnaChain: E: PDB Molecule:lin-12 protein; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna
Resolution3.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   132.......140..... ....150.........160.........170.........180.........190.. .......200..
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Query Sequence  DEDGDTPLHIAVVQ. GNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV. . . . . . . . TAGASPMALD
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Template Sequence  XENEESPIKLHTEAAGSYAITE. . . . PITRESVNII. DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXD
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   949950.........960.........970 .........980 .........990.........1000.........1010.........1020...
 
   203......210.........220.........230... ......
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Query Sequence  RHGQTAAHLACEHRSPTCLRALLDSAAPGTL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DLEARN
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Template Sequence  CDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVA
Template Known Secondary structure  TTS

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   1092.......1100.........1110.........1120.........1130.........1140.........1150.........1160.........1170.
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR
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Template Sequence  HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQE
Template Known Secondary structure  S
STTT

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   1172.......1180.........1190.........1200.........1210.........1220.........1230.........1240.........1250.
 
   320.........330.........340.........350.........360..
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Query Sequence  GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA
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Template Sequence  GRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD
Template Known Secondary structure  T
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   1252.......1260.........1270.........1280.........1290....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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