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Job DescriptionP20749
Confidence99.94%DateTue Apr 3 15:06:46 BST 2012
Rank35Aligned Residues233
% Identity14%Templatec2nyjA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  GDTPLHIAVVQGNLPAVHRLVNLFQ. . . QGGRELDIY. NNLRQTPLH. . . LAVITTLPSVVRLLVTAGASPMALDRHGQT
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Template Sequence  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAXLNLHNGQNDTIALLLDVARKTDSLKQFVNA
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   113......120.........130.........140.........150.........160.........170.........180.........190..
 
   208.210.........220.........230.........240.........250.........260.........270.........280.......
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Query Sequence  AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN
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Template Sequence  SYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKFGELPLSLAACTNQLAIVKFLLQNSWQPADIS
Template Known Secondary structure  B

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   193......200.........210.........220.........230.........240.........250.........260.........270..
 
   288.290.........300.........310.........320.........330.........340.........350.........360.......
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Query Sequence  SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS
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Template Sequence  ARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH
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   279280.........290.........300.........310.........320.........330.........340.........350........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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