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Job DescriptionP20749
Confidence99.92%DateTue Apr 3 15:06:46 BST 2012
Rank39Aligned Residues141
% Identity30%Templatec3deoA_
PDB info PDB header:protein transport, membrane proteinChain: A: PDB Molecule:signal recognition particle 43 kda protein; PDBTitle: structural basis for specific substrate recognition by the2 chloroplast signal recognition particle protein cpsrp43
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   135....140.........150.........160.........170.........180.........190.........200.........210....
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Query Sequence  GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE
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Template Sequence  GEGAMEYLIEWKDGHSPS. . . . WVPSSYIAADV. VSEYETPWWTAARKADEQALSQLLE. DRDVDAVDENGRTALLFVAG
Template Known Secondary structure  TTTTT



....GGGS
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   96...100.........110... ......120.... .....130.........140......... 150.........160.........
 
   215....220.........230.........240.........250.........260.........270.........280.........290....
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Query Sequence  HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL
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Template Sequence  LGSDKCVRLL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
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   170.........
 
   295....300.........310.........320.........330.........340.........350.
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Query Sequence  LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS
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Template Sequence  AEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE
Template Known Secondary structure  TT

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   180.........190.........200.........210.........220.........230......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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