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Job DescriptionQ13625
Confidence52.81%DateWed Jun 6 09:54:47 BST 2012
Rank400Aligned Residues223
% Identity5%Templatec2yfaA_
PDB info PDB header:receptorChain: A: PDB Molecule:methyl-accepting chemotaxis transducer; PDBTitle: x-ray structure of mcps ligand binding domain in complex with malate
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   56...60.........70.........80.........90.........100.........110.........120.........130.....
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Query Sequence  VADNERMFDVLQRFGSQRNEVRFFLRHERPPGRDIVSGPRSQDPSLKRNGVKVPGEYRRKENGVNSPRMDLTLAELQEMA
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Template Sequence  MGDIGQLNKDLTDL. . RIARLQYMIANGDDTAAANTLAKLDAFSKQQAYLATTFKSPENVKLLGELGDTISAYKLSLNKM
Template Known Secondary structure  ..TTT


S
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   50.........60... ......70.........80.........90.........100.........110.........120.......
 
   136...140.........150.........160......... 170.........180.........190..... ....200.....
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Query Sequence  SRQQQQIEAQQQLLATKEQRLKFLKQQDQRQQQQ. . . . . VAEQEKLKRLKEIAENQEAKLKKVRA. . . . . LKGHVEQKRL
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Template Sequence  RQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALR
Template Known Secondary structure  S
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S

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   128.130.........140.........150.........160.........170.........180.........190.........200.......
 
   206...210.........220.........230.........240.........250.........260.........270.........280
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Query Sequence  SNGKLVEEIEQMNNLFQQKQRELVLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDRLYKELQLRNKLNQEQ
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Template Sequence  QLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDAVRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLER
Template Known Secondary structure 
GGGT
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   208.210.........220.........230.........240.........250.........260.........270.........280..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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