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Job Description | Q13625 | Confidence | 99.30% | Date | Wed Jun 6 09:54:47 BST 2012 |
Rank | 46 | Aligned Residues | 89 |
% Identity | 24% | Template | c1oy3D_ |
PDB info |
PDB header:dna binding protein | Chain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; |
PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex
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Resolution | 2.05 Å |
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928 | . | 930 | . | . | . | . | . | . | . | . | . | 940 | . | . | . | . | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . | . | 980 | . | . | . | . | . | . | . | . | . | 990 | . | . | . | . | . | . | . | . | . | 1000 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
A | L | L | L | D | S | S | L | E | G | E | F | D | L | V | Q | R | I | I | Y | E | V | D | D | P | S | L | P | N | D | E | G | I | T | A | L | H | N | A | V | C | A | G | H | T | E | I | V | K | F | L | V | Q | F | G | V | N | V | N | A | A | D | S | D | G | W | T | P | L | H | C | A | A | S | C | N | N | V | Q | V |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
P | L | H | V | A | V | I | H | K | D | A | E | M | V | R | L | L | R | D | A | G | A | D | L | N | K | P | E | P | T | C | G | R | T | P | L | H | L | A | V | E | A | Q | A | A | S | V | L | E | L | L | L | K | A | G | A | D | P | T | A | R | M | Y | G | G | R | T | P | L | G | S | A | L | L | R | P | N | P | I | L |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . |
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1008 | . | 1010 | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
C | K | F | L | V | E | S | G | A |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
A | R | L | L | R | A | H | G | A |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
290 | . | . | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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