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Job DescriptionQ13625
Confidence93.89%DateWed Jun 6 09:54:47 BST 2012
Rank317Aligned Residues172
% Identity10%Templatec3l9oA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
Resolution3.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   99100.........110.........120.........130.........140.........150.........160..
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Query Sequence  PSLKRNGVKVPGEYRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQ. . . . . . . . . . . . . . . .
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Template Sequence  FQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDN
Template Known Secondary structure  TT


TTS

TT

TT

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   610.........620.........630.........640.........650.........660.........670.........680.........
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YGWGAVVDFAKRISAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEESICAVIPITLDSIKSIGNLRLYM
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SSSS


STT

S


SS
TTTT

SGGGSS

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SS



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   690.........700.........710.........720.........730.........740.........750.........760.........
 
   163......170.........180.........190.........200.........210.........220.........230......
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Query Sequence  . . . . . . DQRQQQQVAEQEKLKRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRELVLAVSKVE
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Template Sequence  PKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKH
Template Known Secondary structure 
TTTTS
SS

TT



SS
TT
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   778.780.........790.........800.........810.........820.........830.........840.........850.......
 
   237..240.........250.........260.........270
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Query Sequence  ELTRQLEMLKNGRIDSHHDNQSAVAELDRLYKEL
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Template Sequence  DLHEDMKQLKRKISEQAVIQLDDLRRRKRVLRRL
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   858.860.........870.........880.........890.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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