 |
Job Description | Q13625 | Confidence | 86.52% | Date | Wed Jun 6 09:54:47 BST 2012 |
Rank | 338 | Aligned Residues | 108 |
% Identity | 17% | Template | c1aqfB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:pyruvate kinase; |
PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate
|
Resolution | 2.70 Å |
|
 |
  |   |
1001 | . | . | . | . | . | . | . | . | 1010 | . | . | . | . | . | . | . | . | . | 1020 | . | . | . | . | . | . | . | . | . | 1030 | . | . | . | . | . | . | . | . | . | 1040 | . | . | . | . | . | . | . | . | . | 1050 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 1060 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | C | N | N | V | Q | V | C | K | F | L | V | E | S | G | A | A | V | F | A | M | T | Y | S | D | M | Q | T | A | A | D | K | C | E | E | M | E | E | G | Y | T | Q | C | S | Q | F | L | Y | G | V | Q | E | K | M | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | M | N | K | G | V | I | Y | A | L | W | D | Y |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|
|   |   |   |
|
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |
|   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|   |
|   |   |
|
|   |
|
|   |   |
|   |
|
|
|   |
|
|
| . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|   |
|
|
|
|
|   |
|   |   |
Template Sequence |   |
A | S | R | S | V | E | T | L | K | E | M | I | K | S | G | M | N | V | A | R | M | N | F | S | H | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
T | H | E | Y | H | A | E | T | I | K | N | V | R | T | A | T | E | S | F | A | S | D | P | I | L | Y | R | P | V | A | V | A | L | D | T | K | G | P | E | I | R | T | G | L | I |
Template Known Secondary structure |   |
T | S |
| S |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  | T | T | S |
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T | T |
| T | T | T |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
| B | B |
|
| B |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
53 | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
  |
  |   |
1069 | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | . | . | . | . | . | . | . | 1090 | . | . | . | . | . | . | . | . | . | 1100 | . | . | . | . | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | P | Q | N | D | D | E | L | P | M | K | E | G | D | C | M | T | I | I | H | R | E | D | E | D | E | I | E | W | W | W | A | R | L | N | D | K | E | G | Y | V | P | R | N | L | L | G | L | Y | P | R | I | K | P | R | Q | R |
Query Conservation |   |
  |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |
|
|   |
Template Sequence |   |
K | G | S | G | T | A | E | V | E | L | K | K | G | A | T | L | K | I | T | L | D | N | A | Y | M | E | . |
. |
. |
. |
. |
. |
. |
. |
K | C | D | E | N | I | L | W | L | D | Y | K | N | I | C | K | V | V | D | V | G | S | K |
Template Known Secondary structure |   |
T | T | B | S | S |
|
|
| B |
|
| T | T |
|  |  |  |  |  |
|
| G | G | G | S | S | . | . | . | . | . | . | . | . |
| B | B | T | T |  |  |  | B | S |
| T | T |  |  |  |  |
|
| T | T |
|  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|