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Job DescriptionQ13625
Confidence80.84%DateWed Jun 6 09:54:47 BST 2012
Rank344Aligned Residues104
% Identity20%Templatec3mkqB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   931..... ...940.........950.........960........ .970.........980.......
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Query Sequence  LDSSLE. GEFDLVQRIIYEVDDPSLPNDEGITALHNAVC. AGHTEIVKFLVQFGVNVNA. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FDLALEYGNLDAALDEAKKLNDSIT. . . . . WERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA
Template Known Secondary structure  TT


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   653......660.........670....... ..680.........690.........700.........710.........720.......
 
   988.990.........1000...... ...1010..... ....1020.........1030.........
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Query Sequence  . ADSDGWTPLHCAASCNNVQ. VCKFLVESG. . . . AAVFAMTYSDMQTAADKCEEMEEG
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Template Sequence  QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVD
Template Known Secondary structure  TT
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   728.730.........740.........750.........760.........770.........780.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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