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Job DescriptionQ13625
Confidence61.61%DateWed Jun 6 09:54:47 BST 2012
Rank373Aligned Residues206
% Identity11%Templatec2xgjA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   91........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  VSGPRSQDPSLKRNGVKVPGEYRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQ. . . . . . . .
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Template Sequence  EFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVE
Template Known Secondary structure 

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SS


S
TTSGGG

TT
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   602.......610.........620.........630.........640.........650.........660.........670.........680.
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIP
Template Known Secondary structure  TTT


SS
TT



TTTTTTS
GGG

TT




TT

B

TT

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   682.......690.........700.........710.........720.........730.........740.........750.........760.
 
   163......170.........180.........190.........200.........210.........220
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . DQRQQQQVAEQEKLKRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNL
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Template Sequence  ITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLT
Template Known Secondary structure 
GGG



SSTT
SSSSSS


B

TTTTS



TTS
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   762.......770.........780.........790.........800.........810.........820.........830.........840.
 
   221........230.........240.........250.........260.........270.........280.........290........
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Query Sequence  FQQKQRELVLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEV
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Template Sequence  NSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ. . LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDEL
Template Known Secondary structure  SSS
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TTS
TT..TSB
TT

B
T

SS
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   842.......850.........860.........870........ .880.........890.........900.........910.......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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