Return to main results Retrieve Phyre Job Id

Job DescriptionQ13625
Confidence99.57%DateWed Jun 6 09:54:47 BST 2012
Rank16Aligned Residues84
% Identity21%Templatec2fo1E_
PDB info PDB header:gene regulation/signalling protein/dnaChain: E: PDB Molecule:lin-12 protein; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna
Resolution3.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   930.........940.........950 .........960.........970.........980.........990.........1000........
Predicted Secondary structure 




.





























Query SS confidence 




















.

























































Query Sequence  LLDSSLEGEFDLVQRIIYEVD. DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC
Query Conservation 
  
   
    
        .        
 
 

 
   
   

  
   
  


 
  





 

        
Alig confidence 




















.

























































Template Conservation                                
 



 
   
    
  

  




  
  
 


  
   
   

Template Sequence  LHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIV
Template Known Secondary structure  SS

S


TT


TT


T
TT

SS


SSS

TT
Template Predicted Secondary structure 




















































Template SS confidence 















































































   1211........1220.........1230.........1240.........1250.........1260.........1270.........1280.........1290
 
   10091010...
Predicted Secondary structure 
Query SS confidence 




Query Sequence  KFLVE
Query Conservation    

 
Alig confidence 




Template Conservation   

 
Template Sequence  DIFDR
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 




   1291....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions