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Job DescriptionQ13625
Confidence97.40%DateWed Jun 6 09:54:47 BST 2012
Rank284Aligned Residues309
% Identity9%Templatec1sjjB_
PDB info PDB header:contractile proteinChain: B: PDB Molecule:actinin; PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-2 actinin
Resolution20.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60.........70.........80.........
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Query Sequence  LSNNEQHFTEVPVTPETICRDVVDLCKEPGESDCHLAEVWCGSERPVADNERMFDVLQRFGSQRNEVRFFLRHERPPGRD
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Template Sequence  LSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETAT
Template Known Secondary structure  TTT





SSTT
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   348.350.........360.........370.........380.........390.........400.........410.........420.......
 
   90.........100.........110.........120.........130.........140.........150.........160.........
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Query Sequence  IVSGPRSQDPSLKRNGVKVPGEYRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQDQRQQQQ
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Template Conservation 
 

       
    
          
      
                        
                    
Template Sequence  LSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLET
Template Known Secondary structure  TTTTT
TT
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   428.430.........440.........450.........460.........470.........480.........490.........500.......
 
   170.........180.........190.........200.........210.........220.........230.........240.........
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Query Sequence  VAEQEKLKRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRELVLAVSKVEELTRQLEMLKNGR
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Template Conservation 
     
                                      
 
             
      
      
    
Template Sequence  IDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNM
Template Known Secondary structure  TTTTTTT




SSTTTT

S
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   508.510.........520.........530.........540.........550.........560.........570.........580.......
 
   250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  IDSHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNELRDRLWKKKAALQQ
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Template Sequence  AGTNPYTTITPQEINGKWEHVR. . . QLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGR
Template Known Secondary structure 
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   588.590.........600......... 610.........620.........630.........640.........650......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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