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Job DescriptionQ13625
Confidence96.01%DateWed Jun 6 09:54:47 BST 2012
Rank305Aligned Residues310
% Identity8%Templatec2oexB_
PDB info PDB header:protein transportChain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain
Resolution2.58 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  FLTVYLSNNEQHFTEVPVTPETICRDVVDLCKEPGESDCHLAEVWCGSERPVADNERMFDVLQRFGSQRNEVRFFLRHER
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Template Sequence  LVNRSIAQXREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIE. QGGIQTVDQLIKELPELLQRNREILDESL
Template Known Secondary structure  TTTTGGGG

STTS

.TTT
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   377..380.........390.........400.........410.........420...... ...430.........440.........450.....
 
   85....90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  PPGRDIVSGPRSQDPSLKRNGVKVPGEYRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQ. .
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Template Conservation    
                             
          
         
             
            
Template Sequence  RLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP
Template Known Secondary structure  SSTT

S

TTTTS
TTS
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   456...460.........470.........480.........490.........500.........510.........520.........530.....
 
   163......170.........180.........190. ........200.........210.........220........
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Query Sequence  . . . . . . . . . . DQRQQQQVAEQEKLKRLKEIAENQEAKLK. . . . KVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQREL
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Template Conservation                     
             
                                              
Template Sequence  SANPAKTXQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDXTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKV
Template Known Secondary structure 




TTTTT
T



SSS

T
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   536...540.........550.........560.........570.........580.........590.........600.........610.....
 
   229230.........240.........250.........260.........270.........280.........290.........300........
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Query Sequence  VLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNEL
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Template Conservation           
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Template Sequence  QESLKKQEGLLKNIQVSHQEFSKXKQSNNEAN. LREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI
Template Known Secondary structure  TTTS


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   616...620.........630.........640....... ..650.........660.........670.........680.........690....
 
   309310......
Predicted Secondary structure 
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Query Sequence  RDRLWKKK
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Template Conservation     
  

Template Sequence  VFARKTER
Template Known Secondary structure  T
Template Predicted Secondary structure 

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   695....700..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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