Return to main results Retrieve Phyre Job Id

Job DescriptionQ13625
Confidence99.65%DateWed Jun 6 09:54:47 BST 2012
Rank10Aligned Residues169
% Identity20%Templatec3ui2A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic; PDBTitle: crystal structure of the cpsrp54 tail bound to cpsrp43
Resolution3.18 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   925....930.........940.........950.........960.........970.........980........ .990.........1000...
Predicted Secondary structure 


























.







Query SS confidence 































































.














Query Sequence  NPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA. DSDGWTPLHCAASCN
Query Conservation   

 

  
   
    
                
 
 

 
   
   

  
   
  


 .
  





 

   
Alig confidence 




...















.






































.














Template Conservation 


  ...

  
    
  

  . 


  
  
 
 

 
   
       

               
 
  

   
Template Sequence  TPWWT. . . AARKADEQALSQLLED. RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV
Template Known Secondary structure  ...TTT
TTTT.

TT
B
TTS
BT
TT

TT


SSS


TT
Template Predicted Secondary structure 
...


.





























Template SS confidence 















































































   130.... .....140.........150 .........160.........170.........180.........190.........200.....
 
   1004.....1010.........1020.........1030.........1040.........1050.........1060........ .1070.........1080..
Predicted Secondary structure 


























.













Query SS confidence 
































































.













Query Sequence  NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY. EPQNDDELPMKEGD
Query Conservation         

  

     
 

  
   


   

   
   
    
  
    
 
 
   
.     


      
Alig confidence 



















.











































.













Template Conservation      
  

  


    
 . 
 


  
                    
      
                 
    
Template Sequence  RPEVVEALVELGADIEVEDE. RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKD
Template Known Secondary structure 
TT

TT


T.T


TT


SS




S
TTS
Template Predicted Secondary structure 












.
















Template SS confidence 















































































   206...210.........220..... ....230.........240.........250.........260.........270.........280....
 
   1083......1090........
Predicted Secondary structure 






Query SS confidence 















Query Sequence  CMTIIHREDEDEIEWW
Query Conservation       
     
  

Alig confidence 















Template Conservation     
    
   
   
Template Sequence  VEYLVRWKDGGDCEWV
Template Known Secondary structure 
SSSS
Template Predicted Secondary structure 






Template SS confidence 















   285....290.........300
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions