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Job DescriptionQ13625
Confidence99.30%DateWed Jun 6 09:54:47 BST 2012
Rank44Aligned Residues92
% Identity28%Templatec3v30A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:dna-binding protein rfxank; PDBTitle: crystal structure of the peptide bound complex of the ankyrin repeat2 domains of human rfxank
Resolution1.57 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   930.........940........
Predicted Secondary structure 


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Query Sequence  LLDSSLEGEFDLVQRIIYE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV
Template Known Secondary structure  TT
TT
SGGGG


TTS

TT
T

TT


TT


TT
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   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   949950.........960.........970.........980.........990.........1000.........1010.........1020.
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Query Sequence  . . . . . . VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM
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Template Conservation                                                
  
 



 
   
  


  

  

 
   
Template Sequence  GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS
Template Known Secondary structure  TTT

TT


TTS

TT
TT

TT


TTS

T
S

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   174.....180.........190.........200.........210.........220.........230.........240.........250..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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