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Job DescriptionQ13625
Confidence74.26%DateWed Jun 6 09:54:47 BST 2012
Rank351Aligned Residues311
% Identity6%Templatec1hciB_
PDB info PDB header:triple-helix coiled coilChain: B: PDB Molecule:alpha-actinin 2; PDBTitle: crystal structure of the rod domain of alpha-actinin
Resolution2.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60.........70........ .80....
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Query Sequence  YLSNNEQHFTEVPVTPETICRDVVDLCKEPGESDCHLAEVWCGSERPVADNERMFDVLQRFGSQRNEVRF. . . . FLRHER
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Template Conservation                    
          
                           
   
                  
Template Sequence  FMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRA
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GGG
SSSTTTT

GGGS

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   360.........370.........380.........390.........400.........410.........420.........430.........
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  PPGRDIVSGPRSQDPSLKRNGVKVPGEYRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQDQ
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Template Conservation                                                
                 
               
Template Sequence  LLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHL
Template Known Secondary structure  TT
TT
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   440.........450.........460.........470.........480.........490.........500.........510.........
 
   165....170.........180... ......190.........200.........210.........220
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Query Sequence  RQQQQVAEQEKLKRLKEIA. . . . . . . . . . ENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNL. . . . . . . . . . . . . .
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Template Conservation                                                                                  
Template Sequence  EFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPY
Template Known Secondary structure  TT




SSTTT

S
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TT
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   520.........530.........540.........550.........560.........570.........580.........590.........
 
   221........230.........240.........250.........260.........270......... 280.........290..
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Query Sequence  . . . . FQQKQRELVLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDRLYKELQLRNKLNQE. . . . QNAKLQQQRECLN
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Template Conservation         
      
          
                           
      
          
        
Template Sequence  STVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLK
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SS
S
S
TTTTST
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   600.........610.........620.........630.........640.........650.........660.........670.........
 
   293......300.........310.........
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Query Sequence  KRNSEVAVMDKRVNELRDRLWKKKAAL
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Template Sequence  QYEHNIINYKNNIDKLEGDHQLIQEAL
Template Known Secondary structure  TT
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   680.........690.........700......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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