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Job DescriptionQ13625
Confidence44.07%DateWed Jun 6 09:54:47 BST 2012
Rank424Aligned Residues118
% Identity24%Templatec3pppA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   973......980 .........990 .........1000....... ..1010.........
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Query Sequence  EIVKFLVQ. . FGVNVNAADS. DGWTPLHCAASCNNVQV. . . . . . . . . . . . . . . . . . . . . CKFLVESGAAVF. . . . . . . . .
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Template Sequence  NMIAQLIEHDTDLNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQKRFSYKWF
Template Known Secondary structure 
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   4950.........60.........70.........80.........90.........100.........110.........120........
 
   1020.........1030.. .......1040...... ...1050.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . AMTYSDMQTAADK. . . . . . . . . CEEMEEGYTQCSQF. . . . . . . . . LYGVQEKMGIMNK
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Template Sequence  DSYGFDNTYAFTVTKKFAEKEHINTVSDLKKNASQYKLGVDNAWLKRKGDGYKGFVSTYGFEFGTTYPMQIGLVYDAVKN
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SBGGGGGGGGGG

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   129130.........140.........150.........160.........170.........180.........190.........200........
 
   1060.........1070. ........1080.........1090
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Query Sequence  GVIYALWDYEPQ. . . . . . . . . . . NDDELPMKEGDCMTIIHRE
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Template Sequence  GKMDAVLAYSTDGRIKAYDLKILKDDKRFFPPYDCSPVIPEK
Template Known Secondary structure  TS
STT
TTT
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   209210.........220.........230.........240.........250
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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