 |
Job Description | Q13625 | Confidence | 98.93% | Date | Wed Jun 6 09:54:47 BST 2012 |
Rank | 142 | Aligned Residues | 72 |
% Identity | 19% | Template | c1wxuA_ |
PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:peroxisomal biogenesis factor 13; |
PDBTitle: solution structure of the sh3 domain of mouse peroxisomal2 biogenesis factor 13
|
Resolution | UNK |
|
 |
  |   |
1055 | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | . | . | . | . | . | . | . | 1090 | . | . | . | . | . | . | . | . | . | 1100 | . | |
|
. | . | . | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  | . | . |
|
|
|  |  |
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | I | M | N | K | G | V | I | Y | A | L | W | D | Y | E | P | Q | N | D | D | E | L | P | M | K | E | G | D | C | M | T | I | I | H | R | E | D | E | D | E | I | E | W | W | W | A | R | . |
. |
L | N | D | K | E | G | Y | V | P | R | N | L | L | G | L | Y | P | R | I | K | P | R | Q | R | S |
Query Conservation |   |
|   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|
|
|   |   | . | . |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|   |
|   |   |   |   |
|
|
|   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
G | E | D | D | H | V | V | A | R | A | E | Y | D | F | V | A | V | S | D | E | E | I | S | F | R | A | G | D | M | L | N | L | A | L | K | E | Q | Q | P | K | V | R | G | W | L | L | A | S | L | D | G | Q | T | T | G | L | I | P | A | N | Y | V | K | I | L | G | K | R | R | G | R | K | T | I |
Template Known Secondary structure |   |
T | S | S |
| B | B |
|  |  |  | S | S |
| B |
|
| S | S | S | S | B |
|
| B |
| S | S |
| B |
|  |  |
|
| T | T | T | S |
| S |
| S | S |
|  |  |  |  | S | S | S | S | S |
|  |  |  |
| S | T | T |  |  |  |
|
|
| B |
|
| S | T | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|