 |
Job Description | Q13625 | Confidence | 35.39% | Date | Wed Jun 6 09:54:47 BST 2012 |
Rank | 483 | Aligned Residues | 92 |
% Identity | 5% | Template | c3gbhC_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:nad(p)h-flavin oxidoreductase; |
PDBTitle: crystal structure of a putative nad(p)h:fmn oxidoreductase (se1966)2 from staphylococcus epidermidis atcc 12228 at 2.00 a resolution
|
Resolution | 2.00 Å |
|
 |
  |   |
971 | . | . | . | . | . | . | . | . | 980 | . | . | . | . | . | . | . | . | . | 990 | . | . | . | . | . | . | . | . | . | 1000 | . | . | . | . | . | . | . | . | . | 1010 | . | . | . | . | . | . | . | . | . | 1020 | . | . | . | . | . | . | . | . | . | 1030 | . | . | . | . | . | . | . | . | . | 1040 | . | . | . | . | . | . | . | . | . | 1050 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | T | E | I | V | K | F | L | V | Q | F | G | V | N | V | N | A | A | D | S | D | G | W | T | P | L | H | C | A | A | S | C | N | N | V | Q | V | C | K | F | L | V | E | S | G | A | A | V | F | A | M | T | Y | S | D | M | Q | T | A | A | D | K | C | E | E | M | E | E | G | Y | T | Q | C | S | Q | F | L | Y | G | V |
Query Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |
|   |   |
|
|
|   |
|   |   |
|
|
|
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   |   |
|   |
|
|   |   |
|   |   |   |
|
|
|   |   |   |
|
|   |   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
Template Sequence |   |
K | A | Q | L | L | D | W | I | L | P | Y | Y | K | N | L | S | R | E | G | X | K | D | I | V | N | I | D | S | S | L | X | A | X | Q | L | X | L | T | A | K | A | H | G | Y | D | T | N | P | I | G | G | F | D | K | E | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
| S |
| T | T | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. |
  |
  |   |
1051 | . | . | . | . | . | . | . | . | 1060 | |
|
. | . | . | . | . | |
. | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
| . | . |
|  |  |  |  | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | E | K | M | G | I | M | N | K | G | . |
. |
V | I | Y | A | L | . |
W | D | Y | E | P | Q | N | D | D | E | L | P | M | K | E | G | D | C | M | T |
Query Conservation |   |
  |
|   |   |
|   |   |   |   |
| . | . |   |
|   |
|   | . |   |   |
|   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |
|   |
|   |   |
|
|
|
Template Sequence |   |
A | D | I | I | G | Y | D | S | D | R | Y | V | P | V | L | A | I | A | I | G | K | K | A | Q | D | A | H | D | S | V | R | L | P | I | D | D | V | R |
Template Known Secondary structure |   |
 |  |  |  | T |
|
| T | T | T |  |  |  |  |  |  |  |  |  |  |
| B | S | S |
|
|
|
|
|
|
|
|
| G | G | G | T |
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
172 | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|