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Job DescriptionQ13625
Confidence93.19%DateWed Jun 6 09:54:47 BST 2012
Rank320Aligned Residues288
% Identity7%Templatec3r6nA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:desmoplakin; PDBTitle: crystal structure of a rigid four spectrin repeat fragment of the2 human desmoplakin plakin domain
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50..... ....60.........70.........80.........90.........100........
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Query Sequence  LCKEPGESDCHLAEVWCGSERP. . . . . VADNERMFDVLQRFGSQRNEVRFFLRHERPPGRDIVSGPRSQDPSLKRNGVKV
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Template Sequence  TKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENLLKASF
Template Known Secondary structure  TTS








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   184.....190.........200.........210.........220.........230.........240.........250.........260...
 
   109110.........120.........130.........140. ........150.........160.........170...... ...180.....
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Query Sequence  PGEYRRKENGVNSPRMDLTLAELQEMASRQQQQ. IEAQQQLLATKEQRLKFLKQQDQRQQQQVAEQEKL. . KRLKEIAEN
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Template Conservation       
                                             
  
                 
       
Template Sequence  ERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPA
Template Known Secondary structure  S


STT


TTTT
TT
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   264.....270.........280.........290.........300.........310.........320.........330.........340...
 
   186...190.........200.........210.........220.........230.........240.........250.........260.....
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Query Sequence  QEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRELVLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDR
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Template Sequence  SDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEK
Template Known Secondary structure  S


TT

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   344.....350.........360.........370.........380.........390.........400.........410.........420...
 
   266...270.........280.........290.........300.........310.........320.
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Query Sequence  LYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNELRDRLWKKKAALQQ
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Template Sequence  EREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYKQDQKIVHKG
Template Known Secondary structure  TT



GGGSTT


SS

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TT
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   424.....430.........440.........450.........460.........470.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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