Return to main results Retrieve Phyre Job Id

Job DescriptionQ13625
Confidence98.11%DateWed Jun 6 09:54:47 BST 2012
Rank275Aligned Residues312
% Identity12%Templatec1ciiA_
PDB info PDB header:transmembrane proteinChain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60.........70.........80........
Predicted Secondary structure 



Query SS confidence 















































































Query Sequence  YLSNNEQHFTEVPVTPETICRDVVDLCKEPGESDCHLAEVWCGSERPVADNERMFDVLQRFGSQRNEVRFFLRHERPPGR
Query Conservation    
   
 
 
     
 
     
  

  
    


     
            
        
    
        
Alig confidence 















































































Template Conservation   
 


    

  

  
    

 
    
                     
      
          
        
Template Sequence  TRSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADAADITRQEFRLLQAELREYG
Template Known Secondary structure 
TT

Template Predicted Secondary structure 
Template SS confidence 















































































   66...70.........80.........90.........100.........110.........120.........130.........140.....
 
   8990.........100.........110... ......120.........130.........140.........150.........160...
Predicted Secondary structure  .....
Query SS confidence 
























. . . . .

















































Query Sequence  DIVSGPRSQDPSLKRNGVKVPGEYR. . . . . RKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQD
Query Conservation                           .....  
             

                     
     
    
Alig confidence 
























.....

















































Template Conservation     
        
      
      
     
                     
     


            
    
Template Sequence  FRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNG
Template Known Secondary structure  TT
SSS
Template Predicted Secondary structure 
Template SS confidence 















































































   146...150.........160.........170.........180.........190.........200.........210.........220.....
 
   164.....170. ........180.........190.........200.........210.........220.......
Predicted Secondary structure  ................
Query SS confidence 







. .























































. . . . . . . . . . . . . .
Query Sequence  QRQQQQVA. . EQEKLKRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRE. . . . . . . . . . . . . .
Query Conservation          ..                        
             
                
..............
Alig confidence 







..























































..............
Template Conservation               
          
      
      
      
      
      
                    
Template Sequence  GAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDS
Template Known Secondary structure  SS
TTTS
Template Predicted Secondary structure 
Template SS confidence 















































































   226...230.........240.........250.........260.........270.........280.........290.........300.....
 
   228.230.........240.........250....
Predicted Secondary structure  .....................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


























Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LVLAVSKVEELTRQLEMLKNGRIDSHH
Query Conservation  .....................................................          
   

 
         
Alig confidence  .....................................................


























Template Conservation                                            
                           
   
     
Template Sequence  IVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQRLLDARN
Template Known Secondary structure 

S
TTT
S

TS
TS



S

SS
Template Predicted Secondary structure 
Template SS confidence 















































































   306...310.........320.........330.........340.........350.........360.........370.........380.....
 
   255....260.........270.........280.........290.........300.........310.........320
Predicted Secondary structure 
Query SS confidence 

































































Query Sequence  DNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNELRDRLWKKKAALQ
Query Conservation         
   
  
                     
     
          
   
        
Alig confidence 

































































Template Conservation         

      
     
       
  
  
 
 
   
  
            
      
Template Sequence  KITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKD
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 

































































   386...390.........400.........410.........420.........430.........440.........450.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions