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Job DescriptionQ13625
Confidence36.42%DateWed Jun 6 09:54:47 BST 2012
Rank473Aligned Residues165
% Identity17%Templatec3thfA_
PDB info PDB header:actin-binding protein/protein bindingChain: A: PDB Molecule:protein shroom; PDBTitle: crystal structure of the sd2 domain from drosophila shroom
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   143......150.........160.........170.........180...... ...190.........200.........210.........
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Query Sequence  EAQQQLLATKEQRLKFLKQQDQRQQQQVAEQEKLKRLKEIAENQ. . . EAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNN
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Template Sequence  QKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTES
Template Known Secondary structure  S
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   1401........1410.........1420.........1430.........1440.........1450.........1460.........1470.........1480
 
   220.........230.........240.........250.........260.........270.........280.........290.........
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Query Sequence  LFQQKQRELVLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVA
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Template Sequence  SLETRQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAK. . . . . . . . . NLSADMCADYDYFINMKAKLIADAR
Template Known Secondary structure  .........S
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   1481........1490.........1500.........1510.........1520...... ...1530.........1540.........1550.
 
   300.........310......
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Query Sequence  VMDKRVNELRDRLWKKK
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Template Sequence  DLAVRIKGSEEQLSSLS
Template Known Secondary structure  T
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   1552.......1560........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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