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Job DescriptionQ13625
Confidence96.27%DateWed Jun 6 09:54:47 BST 2012
Rank302Aligned Residues246
% Identity9%Templatec1f5nA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  ETICRDVVDLCKEPGESDCHLAEVWCGSERPVADNERMFDVLQRFGSQRNEVRFFLRHERPPGRDIVSGPRSQDPSLKRN
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Template Sequence  KAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSG
Template Known Secondary structure 

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GGG
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   330.........340.........350.........360.........370.........380.........390.........400.........
 
   105....110.........120.........130.........140.........150.........160.........170.. ....
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Query Sequence  GVKVPGEYRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQDQRQQQQVAE. . . . . . . . QEKL
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Template Conservation                               
         
        
                       
       
Template Sequence  LLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEI
Template Known Secondary structure  TTTTSSTTSS


TTT
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   410.........420.........430.........440.........450.........460.........470.........480.........
 
   177..180.........190.........200.........210.........220.........230.........240.........250......
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Query Sequence  KRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRELVLAVSKVEELTRQLEMLKNGRIDSHHDN
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Template Conservation                                           
    
                            
    
Template Sequence  EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKES
Template Known Secondary structure  T
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   490.........500.........510.........520.........530.........540.........550.........560.........
 
   257..260.........270
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Query Sequence  QSAVAELDRLYKEL
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Template Sequence  RIMKNEIQDLQTKM
Template Known Secondary structure 
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   570.........580...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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