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Job DescriptionQ13625
Confidence39.46%DateWed Jun 6 09:54:47 BST 2012
Rank445Aligned Residues166
% Identity10%Templatec3qg5A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:rad50; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   160.........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  KQQDQRQQQQVAEQEKLKRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRELVLAVSKVEELT
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Template Conservation                                      
                                           
Template Sequence  SEITEIISDVFQSKETLEKLEKLLKEKXKKLENEKKLKEXSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYL
Template Known Secondary structure  S



TTT
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   154.....160.........170.........180.........190.........200.........210.........220.........230...
 
   240.........250.........260.........270.........280.........290.........300.........310.........
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Query Sequence  RQLEMLKNGRIDSHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNELRDRLWKKKAAL
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Template Conservation                                                     
                
  
       
Template Sequence  DILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASV
Template Known Secondary structure  TTTT

SSSSSTT
GGGS



S



GGG
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   735....740.........750.........760.........770.........780.........790.........800.........810....
 
   320.....
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Query Sequence  QQKENL
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Template Conservation      
 
Template Sequence  LKELER
Template Known Secondary structure  GGGGG
Template Predicted Secondary structure 
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   815....820
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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