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Job DescriptionQ13625
Confidence90.88%DateWed Jun 6 09:54:47 BST 2012
Rank328Aligned Residues116
% Identity16%Templatec2e7sM_
PDB info PDB header:endocytosis/exocytosisChain: M: PDB Molecule:rab guanine nucleotide exchange factor sec2; PDBTitle: crystal structure of the yeast sec2p gef domain
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   173......180.........190.........200.........210.........220.........230.........240.........250..
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Query Sequence  QEKLKRLKEIAENQEAKLKKVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQRELVLAVSKVEELTRQLEMLKNGRIDS
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Template Sequence  EEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA. . . SL
Template Known Secondary structure  TTTTTTTTT...
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   32.......40.........50.........60.........70.........80.........90.........100...... ..
 
   253......260.........270.........280.........290.
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Query Sequence  HHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECL
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Template Sequence  FDEANNLVADARXEKYAIEILNKRLTEQLREKDXLLDTL
Template Known Secondary structure  TTGGGTTTTTTSSTTT
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   109110.........120.........130.........140.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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