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Job DescriptionQ13625
Confidence98.09%DateWed Jun 6 09:54:47 BST 2012
Rank276Aligned Residues302
% Identity8%Templatec2oevA_
PDB info PDB header:protein transportChain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  FLTVYLSNNEQHFTEVPVTPETICRDVVDLCKEPGESDCHLAEVWCGSERPVADNERMFDVLQRFGSQRNEVRFFLRHER
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Template Sequence  LVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIE. QGGIQTVDQLIKELPELLQRNREILDESL
Template Known Secondary structure  TTTTTTTS
SSTTS

T.TTT
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   377..380.........390.........400.........410.........420...... ...430.........440.........450.....
 
   85....90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  PPGRDIVSGPRSQDPSLKRNGVKVPGEYRRKENGVNSPRMDLTLAELQEMASRQQQQIEAQQQLLATKEQRLKFLKQQ. .
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Template Sequence  RLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP
Template Known Secondary structure  TTSSSS

S

SSTTTS
S
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   456...460.........470.........480.........490.........500.........510.........520.........530.....
 
   163......170.........180.........190. ........200.........210.........220........
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Query Sequence  . . . . . . . . . . DQRQQQQVAEQEKLKRLKEIAENQEAKLK. . . . KVRALKGHVEQKRLSNGKLVEEIEQMNNLFQQKQREL
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Template Conservation                            
  
   
   
                             

      
   
Template Sequence  SANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKV
Template Known Secondary structure 




SS
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SSS

T
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   536...540.........550.........560.........570.........580.........590.........600.........610.....
 
   229230.........240.........250.........260.........270.........280.........290.........300........
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Query Sequence  VLAVSKVEELTRQLEMLKNGRIDSHHDNQSAVAELDRLYKELQLRNKLNQEQNAKLQQQRECLNKRNSEVAVMDKRVNEL
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Template Conservation           
   
      
  
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Template Sequence  QESLKKQEGLLKNIQVSHQEFSKMKQSNNE. ANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI
Template Known Secondary structure  S

SS.
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   616...620.........630.........640..... ....650.........660.........670.........680.........690....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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