 |
Job Description | Q13625 | Confidence | 94.90% | Date | Wed Jun 6 09:54:47 BST 2012 |
Rank | 310 | Aligned Residues | 71 |
% Identity | 24% | Template | c3pvlA_ |
PDB info |
PDB header:motor protein/protein transport | Chain: A: PDB Molecule:myosin viia isoform 1; |
PDBTitle: structure of myosin viia myth4-ferm-sh3 in complex with the cen1 of2 sans
|
Resolution | 2.80 Å |
|
 |
  |   |
1044 | . | . | . | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | . | . | . | . | . | . | . | 1090 | . | . | |
|
|
. | . | . | . | . | . | . | 1100 | |
|
. | . | . | . | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . |
|
|
|  |  |  |  |  | . | . |  |
|
|
|  |  |
|
|
|
|
|
|  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | Q | F | L | Y | G | V | Q | E | K | M | G | I | M | N | K | G | V | I | Y | A | L | W | D | Y | E | P | Q | N | D | D | E | L | P | M | K | E | G | D | C | M | T | I | I | H | R | E | D | E | . |
. |
. |
D | E | I | E | W | W | W | A | . |
. |
R | L | N | D | K | E | G | Y | V | P | R | N | L | L | G | L | Y | P |
Query Conservation |   |
  |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   | . | . | . |   |
|   |   |
|
|
|   | . | . |   |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . | . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|   |   | . | . | . | . | . |   |
|   |
|   |   |
|
|   |   |   | . | . |   |   |   |
|   |
|
|
|   |   |
|
|
|
|   |
|   |   |   | . |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |
|   |
|
|   |   |   |
|   |   |   |   |
Template Sequence |   |
V | T | F | L | E | G | L | R | K | . |
. |
. |
. |
. |
R | S | K | Y | V | V | A | L | Q | D | N | . |
. |
P | N | S | G | F | L | S | F | A | K | G | D | L | I | I | L | D | H | D | . |
T | G | E | Q | V | M | N | S | G | W | A | N | G | I | N | E | R | T | K | Q | R | G | D | F | P | T | D | C | V | Y | V | M | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | . | . | . | . | . |  |
|
|  |  |  |  | S | S |
|
| . | . |
|
|
|
| B |
|
|
|
| T | T |
|  |  |  |  | S | S |
| . |
|  |  |  |  |  |  | S | S |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  | G | G | G |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|  |  |  |  |  |  |
|
| . | . |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1557 | . | . | 1560 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 1570 | . | . | . | . | . | . | |
|
. | . | . | 1580 | . | . | . | . | . | . | . | . | . | 1590 | . | . | . | . | . | |
. | . | . | . | 1600 | . | . | . | . | . | . | . | . | . | 1610 | . | . | . | . | . | . | . | . | . | 1620 | . | . | . | . | . | . | . | . |
  |
  |   |
1119 | 1120 | . | . |
Predicted Secondary structure |   |
|
|
|
|
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
R | I | K | P |
Query Conservation |   |
  |   |   |   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
  |   |   |   |
Template Sequence |   |
T | V | T | L |
Template Known Secondary structure |   |
| S | S |
|
Template Predicted Secondary structure |   |
|
|
|
|
Template SS confidence |   |
|
|
|
|
  |   |
1634 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|