Job Description P43405 Confidence 100.00% Date Fri May 25 09:37:32 BST 2012 Rank 154 Aligned Residues 249 % Identity 16% Template c4apcA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase nek1; PDBTitle: crystal structure of human nima-related kinase 1 (nek1) Resolution 2.10 Å

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		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		K	E	L	G	S	G	N	F	G	T	V	K	K	G	Y	Y	Q	M	K	K	V	V	K	T	V	A	V	K	I	L	K	N	E	A	N	D	P	A	L	K	D	E	L	L	A	E	A	N	V	M	Q	Q	L	D	N	P	Y	I	V	R	M	I	G	I	C	.	E	A	E	S	W	M	L	V	M	E	M	A	E	L
Query Conservation																																																																			.
Alig confidence																						.	.																																												.
Template Conservation																						.	.
Template Sequence		E	K	Y	V	R	L	Q	K	I	K	A	I	L	V	K	S	T	E	D	G	.	.	R	Q	Y	V	I	K	E	I	N	I	S	R	M	S	S	K	E	R	E	E	S	R	R	E	V	A	V	L	A	N	M	K	H	P	N	I	V	Q	Y	R	E	S	F	E	E	N	G	S	L	Y	I	V	M	D	Y	C	E	G
Template Known Secondary structure																		T	T	T		.	.											T	T																						T	T	B										T	T										T	T
Template Predicted Secondary structure																						.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		454	.	.	.	.	.	460	.	.	.			.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		G	P	L	N	K	Y	L	Q	Q	N	.	.	R	H	V	K	D	K	N	I	I	E	L	V	H	Q	V	S	M	G	M	K	Y	L	E	E	S	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	T	Q	H	Y	A	K	I	S	D	F	G	L	S	K	A	L	R	A	D	E	N	Y	Y	K	A	Q	T	H
Query Conservation												.	.
Alig confidence												.	.																																																									.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		G	D	L	F	K	R	I	N	A	Q	K	G	V	L	F	Q	E	D	Q	I	L	D	W	F	V	Q	I	C	L	A	L	K	H	V	H	D	R	K	I	L	H	R	D	I	K	S	Q	N	I	F	L	T	K	D	G	T	V	Q	L	G	D	F	G	I	A	R	V	L	.	.	.	N	S	T	V	E	L	A	R	A
Template Known Secondary structure			B								T	T	T																									T	T				T	T		S	G	G	G					T	T							S	T	T			S			.	.	.
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	W	P	V	K	W	Y	A	P	E	C	I	N	Y	Y	K	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	A	F	S	Y	G	Q	K	P	Y	R	G	M	K	G	S	E	V	T	A	M	L	E	K	G	E	R	M	G	C	P	A	G	C	P	R	E	M	Y	D	L	M	N	L	C	W	T	Y
Query Conservation
Alig confidence																																						.
Template Conservation																																						.
Template Sequence		C	I	G	T	P	Y	Y	L	S	P	E	I	C	E	N	K	P	Y	N	N	K	S	D	I	W	A	L	G	C	V	L	Y	E	L	C	T	.	L	K	H	A	F	E	A	G	S	M	K	N	L	V	L	K	I	I	S	G	S	F	P	P	V	S	L	H	Y	S	Y	D	L	R	S	L	V	S	Q	L	F	K	R
Template Known Secondary structure				S			T	T							T	T																						.	S	S		S				S	S											T							T	T	S												T		S
Template Predicted Secondary structure																																						.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	E	N	R	P	G	F	A	A	V	E	L	R	L	R	N	Y	Y	Y	D
Query Conservation
Alig confidence													.	.	.
Template Conservation													.	.	.
Template Sequence		N	P	R	D	R	P	S	V	N	S	I	.	.	.	L	E	K	G	F	I	A
Template Known Secondary structure		S	G	G	G	S							.	.	.		T	S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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