Job Description P43405 Confidence 100.00% Date Fri May 25 09:37:32 BST 2012 Rank 16 Aligned Residues 236 % Identity 27% Template c3qa8A_ PDB info PDB header:immune system, signaling protein Chain: A: PDB Molecule:mgc80376 protein; PDBTitle: crystal structure of inhibitor of kappa b kinase beta Resolution 3.60 Å

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		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.								.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.
Query Sequence		K	E	L	G	S	G	N	F	G	T	V	K	K	G	Y	Y	Q	M	K	K	V	V	K	T	V	A	V	K	I	L	K	N	E	A	N	D	P	A	L	K	D	E	L	L	A	E	A	N	V	M	Q	Q	L	D	N	P	Y	I	V	R	M	I	G	I	C	E	A	E	S	W	.	.	.	.	.	.	.	M	L	V
Query Conservation																																																																								.	.	.	.	.	.	.
Alig confidence																						.	.												.																																					.	.	.	.	.	.	.
Template Conservation																						.	.												.
Template Sequence		E	R	L	G	T	G	G	F	G	Y	V	L	R	W	I	H	Q	D	T	G	.	.	E	Q	V	A	I	K	Q	C	R	Q	E	.	L	S	P	K	N	R	E	R	W	C	L	E	I	Q	I	M	K	K	L	N	H	P	N	V	V	S	A	R	E	V	P	D	G	L	Q	K	L	A	P	N	D	L	P	L	L	A
Template Known Secondary structure						B		S	S	S	B							T	T	T	T	.	.										S		.																					B	T	T	B								T	T	T					T	T	S	S
Template Predicted Secondary structure																						.	.												.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.				.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.				.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure																				.	.	.																																											.	.	.
Query SS confidence																				.	.	.																																											.	.	.
Query Sequence		M	E	M	A	E	L	G	P	L	N	K	Y	L	Q	Q	N	R	H	.	.	.	V	K	D	K	N	I	I	E	L	V	H	Q	V	S	M	G	M	K	Y	L	E	E	S	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	T	Q	H	Y	.	.	.	A	K	I	S	D	F	G	L	S	K	A	L	R	A
Query Conservation																				.	.	.																																											.	.	.
Alig confidence																				.	.	.																																											.	.	.
Template Conservation
Template Sequence		M	E	Y	C	E	G	G	D	L	R	K	Y	L	N	Q	F	E	N	C	C	G	L	K	E	G	P	I	R	T	L	L	S	D	I	S	S	A	L	R	Y	L	H	E	N	R	I	I	H	R	D	L	K	P	E	N	I	V	L	Q	P	G	P	Q	R	L	I	H	K	I	I	D	L	G	Y	A	K	E	L	D	Q
Template Known Secondary structure						S	S		B							S	S	S		T	T				S	S																			T	T	B							S	T	T							S	S	S							S						B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.		.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure																																																							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	N	Y	Y	K	A	Q	T	H	G	K	W	P	V	K	W	Y	A	P	E	C	I	N	Y	Y	K	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	A	F	S	Y	G	Q	K	P	Y	R	.	G	M	K	G	S	E	V	T	A	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.																																								.							.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																																								.
Template Sequence		G	E	L	.	.	.	.	C	T	E	F	V	G	T	L	Q	Y	L	A	P	E	L	L	E	Q	K	K	Y	T	V	T	V	D	Y	W	S	F	G	T	L	A	F	E	C	I	T	.	G	F	R	P	F	L	P	N	W	Q	P	V	Q	W	H	G	K	V	R	I	V	V	Y	D	D	L	T	G	A	V	K	F	S
Template Known Secondary structure					.	.	.	.						S			T	T		S	S		S	S			S			S	T	T															S	.	S		S	S			S	S						S	S	T	T					S					S	S	S
Template Predicted Secondary structure					.	.	.	.																																								.
Template SS confidence
		176	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
			586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	E	K	G	E	R	M	G	C	P	A	G	C	P	R	E	M	Y	D	L	M	N	L	C	W	T	Y	D	V	E	N	R	P	G
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		S	V	L	P	T	P	N	H	L	S	G	I	L	A	G	K	L	E	R	W	L	Q	C	M	L	M	W	H	Q	R	T	D	P	Q
Template Known Secondary structure		S	S	S			S					G	G	G												S		S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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