Job Description P43405 Confidence 100.00% Date Fri May 25 09:37:32 BST 2012 Rank 257 Aligned Residues 230 % Identity 26% Template c3kn5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:ribosomal protein s6 kinase alpha-5; PDBTitle: crystal structure of the c-terminal kinase domain of msk1 in complex2 with amp-pnp Resolution 2.40 Å

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		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.
Predicted Secondary structure																																																													.																	.
Query SS confidence																																																													.																	.
Query Sequence		L	L	T	L	E	D	K	E	L	G	S	G	N	F	G	T	V	K	K	G	Y	Y	Q	M	K	K	V	V	K	T	V	A	V	K	I	L	K	N	E	A	N	D	P	A	L	K	D	E	L	L	A	E	A	N	V	M	Q	Q	L	.	D	N	P	Y	I	V	R	M	I	G	I	C	E	A	E	S	.	W	M	L
Query Conservation																																																													.																	.
Alig confidence																												.	.													.	.	.	.	.															.																	.
Template Conservation																												.	.													.	.	.	.	.
Template Sequence		D	L	D	L	K	D	K	P	L	G	E	G	S	F	S	I	C	R	K	C	V	H	K	K	S	N	.	.	Q	A	F	A	V	K	I	I	S	K	R	M	.	.	.	.	.	E	A	N	T	Q	K	E	I	T	A	L	K	L	C	E	G	H	P	N	I	V	K	L	H	E	V	F	H	D	Q	L	H	T	F	L
Template Known Secondary structure					S	S	S			S	B			T	T									T	T	T	T	.	.										G	G	G	.	.	.	.	.														T	T	T		T	T	B										S	S
Template Predicted Secondary structure																												.	.													.	.	.	.	.
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.			450	.	.	.	.	.	.	.	.	.	460	.						.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	E	M	A	E	L	G	P	L	N	K	Y	L	Q	Q	N	R	H	V	K	D	K	N	I	I	E	L	V	H	Q	V	S	M	G	M	K	Y	L	E	E	S	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	T	Q	H	Y	A	K	I	S	D	F	G	L	S	K	A	L	R	A	D	E	N	Y	Y
Query Conservation
Alig confidence																																																										.																		.	.	.	.	.	.
Template Conservation																																																										.																		.	.	.	.	.	.
Template Sequence		V	M	E	L	L	N	G	G	E	L	F	E	R	I	K	K	K	K	H	F	S	E	T	E	A	S	Y	I	M	R	K	L	V	S	A	V	S	H	M	H	D	V	G	V	V	H	R	D	L	K	P	E	N	L	L	F	.	T	D	L	E	I	K	I	I	D	F	G	F	A	R	L	K	P	.	.	.	.	.	.
Template Known Secondary structure								S		B							T		S			B																					T	T								G	G	G				.											T	T						.	.	.	.	.	.
Template Predicted Secondary structure																																																										.																		.	.	.	.	.	.
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.		.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.								.	.	580	.	.	.	.	.	.	.	.	.				590	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.													.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.													.	.	.
Query Sequence		K	A	Q	T	H	G	K	W	P	V	K	W	Y	A	P	E	C	I	N	Y	Y	K	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	A	F	S	Y	G	Q	K	P	Y	R	G	M	K	.	.	.	.	.	.	.	G	S	E	V	T	A	M	L	E	K	G	E	.	.	.	R	M	G	C	P	A	G
Query Conservation																																																					.	.	.	.	.	.	.													.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.										.	.	.	.	.	.	.													.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	G	Y	D	E	S	C	D	L	W	S	L	G	V	I	L	Y	T	M	L	S	.	G	Q	V	P	F	Q	S	H	D	R	S	L	T	C	T	S	A	V	E	I	M	K	K	I	K	K	G	D	F	S	F	E	G	E	A	W	K	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T																	.	S			T	T			S	S		S	S															T						S	T	T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template SS confidence
																					574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.		.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	P	R	E	M	Y	D	L	M	N	L	C	W	T	Y	D	V	E	N	R	P	G	F	A	A	V	E	L	R	L	R	N	Y	Y	Y	D	V	V	N
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		V	S	Q	E	A	K	D	L	I	Q	G	L	L	T	V	D	P	N	K	R	L	K	M	S	G	L	.	.	.	R	Y	N	E	W	L	Q	D	G	S
Template Known Secondary structure																	S	S	S									.	.	.	T	T		G	G	G		T	T
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.				.	.	.	.	.	.	.	.	690	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions