Job Description P43405 Confidence 99.80% Date Fri May 25 09:37:32 BST 2012 Rank 364 Aligned Residues 132 % Identity 16% Template c3ek7A_ PDB info PDB header:fluorescent protein Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent PDBTitle: calcium-saturated gcamp2 dimer Resolution 1.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.				.	.	.	.	.	.	.									510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.						.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.								.	.	.	.	.	.	.	.																												.	.	.	.	.
Query SS confidence																			.	.	.								.	.	.	.	.	.	.	.																												.	.	.	.	.
Query Sequence		E	E	S	N	F	V	H	R	D	L	A	A	R	N	V	L	L	.	.	.	V	T	Q	H	Y	A	K	.	.	.	.	.	.	.	.	I	S	D	F	G	L	S	K	A	L	R	A	D	E	N	Y	Y	K	A	Q	T	H	G	K	W	P	V	.	.	.	.	.	K	W	Y	A	P	E	C	I	N	Y	Y	K	F
Query Conservation																			.	.	.								.	.	.	.	.	.	.	.																												.	.	.	.	.
Alig confidence																			.	.	.								.	.	.	.	.	.	.	.											.	.	.															.	.	.	.	.								.
Template Conservation																																															.	.	.																											.
Template Sequence		H	A	V	R	A	I	G	R	L	S	S	L	E	N	V	Y	I	M	A	D	K	Q	K	N	G	I	K	A	N	F	K	I	R	H	N	I	E	D	G	G	V	Q	L	A	Y	.	.	.	H	Y	Q	Q	N	T	P	I	G	D	G	P	V	L	L	P	D	N	H	Y	L	S	T	Q	S	K	.	L	S	K	D	P
Template Known Secondary structure																						G	G	G	T												B	T	T	S							.	.	.								S	S	S	S							S									.					T
Template Predicted Secondary structure																																															.	.	.																											.
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.
		550	.	.	.	.								.	.	.	.	.	560	.	.	.	.				.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.		.	.	.	.	.	.	.	.				590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.											.	.	.																		.									.	.	.
Query SS confidence							.	.	.	.	.	.	.											.	.	.																		.									.	.	.
Query Sequence		S	S	K	S	D	.	.	.	.	.	.	.	V	W	S	F	G	V	L	M	W	E	.	.	.	A	F	S	Y	G	Q	K	P	Y	R	G	M	K	G	S	E	V	.	T	A	M	L	E	K	G	E	.	.	.	R	M	G	C	P	A	G	C	P	R	E	M	Y	D	L	M	N	L	C	W	T	Y	D	V	E	N
Query Conservation							.	.	.	.	.	.	.											.	.	.																		.									.	.	.
Alig confidence							.	.	.	.	.	.	.											.	.	.				.														.									.	.	.
Template Conservation																														.
Template Sequence		N	E	K	R	D	H	M	V	L	L	E	F	V	T	A	A	G	I	T	L	S	K	G	E	E	L	F	T	.	G	V	V	P	I	L	V	E	L	D	G	D	V	N	G	H	K	F	S	V	S	G	E	G	E	G	D	A	T	Y	G	K	L	T	L	K	F	I	C	T	T	G	K	L	P	V	P	W	P	T	L
Template Known Secondary structure		T			S	S													S								T	T	S	.	S													T	T													T	T	T	T									T	T	S	S		S	S		G	G	G	G
Template Predicted Secondary structure																														.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		616	.	.	.	620	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	G	F	A	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	T	L	V	Q	C
Template Known Secondary structure		T	T	T			G	G
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions