Job Description P43405 Confidence 100.00% Date Fri May 25 09:37:32 BST 2012 Rank 115 Aligned Residues 244 % Identity 25% Template c2y94A_ PDB info PDB header:transferase Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1; PDBTitle: structure of an active form of mammalian ampk Resolution 3.24 Å

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		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.
Predicted Secondary structure																																								.																																				.
Query SS confidence																																								.																																				.
Query Sequence		T	L	E	D	K	E	L	G	S	G	N	F	G	T	V	K	K	G	Y	Y	Q	M	K	K	V	V	K	T	V	A	V	K	I	L	K	N	E	A	.	N	D	P	A	L	K	D	E	L	L	A	E	A	N	V	M	Q	Q	L	D	N	P	Y	I	V	R	M	I	G	I	C	E	A	E	S	.	W	M	L	V	M
Query Conservation																																								.																																				.
Alig confidence																										.	.													.																																				.
Template Conservation																										.	.
Template Sequence		Y	I	L	G	D	T	L	G	V	G	T	F	G	K	V	K	V	G	K	H	E	L	T	G	.	.	H	K	V	A	V	K	I	L	N	R	Q	K	I	R	S	L	D	V	V	G	K	I	R	R	E	I	Q	N	L	K	L	F	R	H	P	H	I	I	K	L	Y	Q	V	I	S	T	P	S	D	I	F	M	V	M
Template Known Secondary structure												S	S	S								T	T	T		.	.																T	T	T												T	T				T	T	B										S	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	E	L	G	P	L	N	K	Y	L	Q	Q	N	R	H	V	K	D	K	N	I	I	E	L	V	H	Q	V	S	M	G	M	K	Y	L	E	E	S	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	T	Q	H	Y	A	K	I	S	D	F	G	L	S	K	A	L	R	A	D	E	N	Y	Y	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	V	S	G	G	E	L	F	D	Y	I	C	K	N	G	R	L	D	E	K	E	S	R	R	L	F	Q	Q	I	L	S	G	V	D	Y	C	H	R	H	M	V	V	H	R	D	L	K	P	E	N	V	L	L	D	A	H	M	N	A	K	I	A	D	F	G	L	S	N	M	M	S	D	G	E	F	L	R	S	C
Template Known Secondary structure					S	S							T	T	S	S	S	S																						T	T	T				S			S	G	G	G					T	T									S	S						T	T			B
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	H	G	K	W	P	V	K	W	Y	A	P	E	C	I	N	Y	Y	K	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	A	F	S	Y	G	Q	K	P	Y	R	G	M	K	G	S	E	V	T	A	M	L	E	K	G	E	R	M	G	C	P	A	G	C	P	R	E	M	Y	D	L	M	N	L	C
Query Conservation
Alig confidence							.	.	.	.																															.																						.
Template Conservation							.	.	.	.																															.																						.
Template Sequence		G	S	P	N	Y	.	.	.	.	A	A	P	E	V	I	S	G	R	L	Y	A	G	P	E	V	D	I	W	S	S	G	V	I	L	Y	A	L	L	C	.	G	T	L	P	F	D	D	D	H	V	P	T	L	F	K	K	I	C	D	G	I	.	F	Y	T	P	Q	Y	L	N	P	S	V	I	S	L	L	K	H	M
Template Known Secondary structure		S		S	T	T	.	.	.	.							T	T			B		S																		.	S	S		S	S			S	S	S									T	T		.					T	T
Template Predicted Secondary structure							.	.	.	.																															.																						.
Template SS confidence
		175	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		609	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	T	Y	D	V	E	N	R	P	G	F	A	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	V	D	P	M	K	R	A	T	I	K	D	I
Template Known Secondary structure		T		S	S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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