Job Description P43405 Confidence 100.00% Date Fri May 25 09:37:32 BST 2012 Rank 117 Aligned Residues 238 % Identity 26% Template c2h6dA_ PDB info PDB header:signaling protein,transferase Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit PDBTitle: protein kinase domain of the human 5'-amp-activated protein2 kinase catalytic subunit alpha-2 (ampk alpha-2 chain) Resolution 1.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.	.	.	.
Predicted Secondary structure																																									.																																			.
Query SS confidence																																									.																																			.
Query Sequence		T	L	E	D	K	E	L	G	S	G	N	F	G	T	V	K	K	G	Y	Y	Q	M	K	K	V	V	K	T	V	A	V	K	I	L	K	N	E	A	N	.	D	P	A	L	K	D	E	L	L	A	E	A	N	V	M	Q	Q	L	D	N	P	Y	I	V	R	M	I	G	I	C	E	A	E	S	.	W	M	L	V	M
Query Conservation																																									.																																			.
Alig confidence																										.	.														.																																			.
Template Conservation																										.	.
Template Sequence		Y	V	L	G	D	T	L	G	V	G	T	F	G	K	V	K	I	G	E	H	Q	L	T	G	.	.	H	K	V	A	V	K	I	L	N	R	Q	K	I	R	S	L	D	V	V	G	K	I	K	R	E	I	Q	N	L	K	L	F	R	H	P	H	I	I	K	L	Y	Q	V	I	S	T	P	T	D	F	F	M	V	M
Template Known Secondary structure												S	S									T	T	T		.	.																T	T														T				T	T	B										S	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	A	E	L	G	P	L	N	K	Y	L	Q	Q	N	R	H	V	K	D	K	N	I	I	E	L	V	H	Q	V	S	M	G	M	K	Y	L	E	E	S	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	T	Q	H	Y	A	K	I	S	D	F	G	L	S	K	A	L	R	A	D	E	N	Y	Y	K	A
Query Conservation
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		E	Y	V	S	G	G	E	L	F	D	Y	I	C	K	H	G	R	V	E	E	M	E	A	R	R	L	F	Q	Q	I	L	S	A	V	D	Y	C	H	R	H	M	V	V	H	R	D	L	K	P	E	N	V	L	L	D	A	H	M	N	A	K	I	A	D	F	G	L	S	N	M	M	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S		B										S																									S	S						G	G	G					T	T	S									G	G	G			.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.		.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Q	T	H	G	K	W	P	V	K	W	Y	A	P	E	C	I	N	Y	Y	K	.	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	A	F	S	Y	G	Q	K	P	Y	R	G	M	K	G	S	E	V	T	A	M	L	E	K	G	E	R	M	G	C	P	A	G	C	P	R	E	M	Y	D	L	M	N	L
Query Conservation																						.
Alig confidence		.	.	.	.	.	.	.	.													.																				.																						.
Template Conservation		.	.	.	.	.	.	.	.																																	.																						.
Template Sequence		.	.	.	.	.	.	.	.	S	D	A	A	P	E	V	I	S	G	R	L	Y	A	G	P	E	V	D	I	W	S	C	G	V	I	L	Y	A	L	L	C	.	G	T	L	P	F	D	D	E	H	V	P	T	L	F	K	K	I	R	G	G	V	.	F	Y	I	P	E	Y	L	N	R	S	V	A	T	L	L	M	H
Template Known Secondary structure		.	.	.	.	.	.	.	.					T	G	G	G	T	T	S																						.	S	S		S	S			S	S													.					T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																	.																						.
Template SS confidence
										165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	W	T	Y	D	V	E	N	R	P	G	F	A	A	V	E	L	R	L	R	N	Y	Y	Y	D
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence		M	L	Q	V	D	P	L	K	R	A	T	I	K	D	I	.	.	.	R	E	H	E	W	F	K
Template Known Secondary structure			T		S	S	G	G	G	S							.	.	.			S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions