Job Description P43405 Confidence 100.00% Date Fri May 25 09:37:32 BST 2012 Rank 53 Aligned Residues 240 % Identity 23% Template c2a1aB_ PDB info PDB header:protein synthesis/transferase Chain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex Resolution 2.80 Å

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		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	E	D	K	E	L	G	S	G	N	F	G	T	V	K	K	G	Y	Y	Q	M	K	K	V	V	K	T	V	A	V	K	I	L	K	N	E	A	N	D	P	A	L	K	D	E	L	L	A	E	A	N	V	M	Q	Q	L	D	N	P	Y	I	V	R	M	I	G	I	C	E	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.													.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.													.	.	.	.	.	.
Template Sequence		F	K	E	I	E	L	I	G	S	G	G	F	G	Q	V	F	K	A	K	H	R	I	D	G	.	.	K	T	Y	V	I	K	R	V	K	Y	N	N	.	.	.	.	.	.	E	K	A	E	R	E	V	K	A	L	A	K	L	D	H	V	N	I	V	H	Y	N	G	C	W	D	G	F	D	Y	D	P	E	T	S	S
Template Known Secondary structure												S	S									S	S	S		.	.												S	.	.	.	.	.	.	G	G	G	G							T	T				T	T	B														T	T
Template Predicted Secondary structure																										.	.													.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.							.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
					441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.			.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure		.	.	.																								.	.
Query SS confidence		.	.	.																								.	.
Query Sequence		.	.	.	A	E	S	W	M	L	V	M	E	M	A	E	L	G	P	L	N	K	Y	L	Q	Q	N	.	.	R	H	V	K	D	K	N	I	I	E	L	V	H	Q	V	S	M	G	M	K	Y	L	E	E	S	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	T	Q	H	Y	A	K	I	S	D	F	G	L
Query Conservation		.	.	.																								.	.
Alig confidence		.	.	.																								.	.
Template Conservation
Template Sequence		R	S	K	T	K	C	L	F	I	Q	M	E	F	C	D	K	G	T	L	E	Q	W	I	E	K	R	R	G	E	K	L	D	K	V	L	A	L	E	L	F	E	Q	I	T	K	G	V	D	Y	I	H	S	K	K	L	I	N	R	D	L	K	P	S	N	I	F	L	V	D	T	K	Q	V	K	I	G	D	F	G	L
Template Known Secondary structure																T	T		B									T	T	S																								T	T				T	T		S	G	G	G						T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	A	L	R	A	D	E	N	Y	Y	K	A	Q	T	H	G	K	W	P	V	K	W	Y	A	P	E	C	I	N	Y	Y	K	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	A	F	S	Y	G	Q	K	P	Y	R	G	M	K	G	S	E	V	T	A	M	L	E	K	G	E	R	M	G	C	P	A
Query Conservation
Alig confidence																		.	.	.	.	.																																.						.	.	.	.	.
Template Conservation																		.	.	.	.	.																																.						.	.	.	.	.
Template Sequence		V	T	S	L	K	N	D	G	K	R	R	S	K	G	T	L	.	.	.	.	.	R	Y	M	S	P	E	Q	I	S	S	Q	D	Y	G	K	E	V	D	L	Y	A	L	G	L	I	L	A	E	L	L	H	.	V	C	D	T	A	.	.	.	.	.	F	E	T	S	K	F	F	T	D	L	R	D	G	I	I	S	D
Template Known Secondary structure					S	S			S						S			.	.	.	.	.	T	T	S						S		S				T																S	.			S	S		.	.	.	.	.												T	T				T
Template Predicted Secondary structure																		.	.	.	.	.																																.						.	.	.	.	.
Template SS confidence
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.						.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.						.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	P	R	E	M	Y	D	L	M	N	L	C	W	T	Y	D	V	E	N	R	P	G	F	A	A	V	E	L	R	L	R	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	F	D	K	K	E	K	T	L	L	Q	K	L	L	S	K	K	P	E	D	R	P	N	T	S	E	I	L	R	T	L	T	V	W
Template Known Secondary structure		T	S												T		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions