Job Description P43405 Confidence 100.00% Date Fri May 25 09:37:32 BST 2012 Rank 199 Aligned Residues 237 % Identity 25% Template c1zy5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase gcn2; PDBTitle: crystal structure of eif2alpha protein kinase gcn2: r794g2 hyperactivating mutant complexed with amppnp. Resolution 2.00 Å

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		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		L	D	R	K	L	L	T	L	E	D	K	E	L	G	S	G	N	F	G	T	V	K	K	G	Y	Y	Q	M	K	K	V	V	K	T	V	A	V	K	I	L	K	N	E	A	N	D	P	A	L	K	D	E	L	L	A	E	A	N	V	M	Q	Q	L	D	N	P	Y	I	V	R	M	I	G	I	C	E	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																																.	.												.	.	.																															.	.	.	.
Template Conservation																																.	.												.	.	.
Template Sequence		L	R	Y	A	S	D	F	E	E	I	A	V	L	G	Q	G	A	F	G	Q	V	V	K	A	R	N	A	L	D	S	.	.	R	Y	Y	A	I	K	K	I	R	H	T	.	.	.	E	E	K	L	S	T	I	L	S	E	V	M	L	L	A	S	L	N	H	Q	Y	V	V	R	Y	Y	A	A	W	L	E	R	R	N
Template Known Secondary structure																		S	S									T	T	T		.	.												.	.	.					T	T	T								T	T				T	T	B												T
Template Predicted Secondary structure																																.	.												.	.	.
Template SS confidence
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.			.	.	.	.	.	.	.	630	.	.	.				.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
					441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460		.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																					.
Query SS confidence		.	.	.																					.
Query Sequence		.	.	.	A	E	S	W	M	L	V	M	E	M	A	E	L	G	P	L	N	K	Y	L	.	Q	Q	N	R	H	V	K	D	K	N	I	I	E	L	V	H	Q	V	S	M	G	M	K	Y	L	E	E	S	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	T	Q	H	Y	A	K	I	S	D	F	G	L	S
Query Conservation		.	.	.																					.
Alig confidence		.	.	.																					.																																																								.
Template Conservation																																																																																	.
Template Sequence		F	V	K	K	S	T	L	F	I	Q	M	E	Y	C	E	N	G	T	L	Y	D	L	I	H	S	E	N	L	N	Q	Q	R	D	E	Y	W	R	L	F	R	Q	I	L	E	A	L	S	Y	I	H	S	Q	G	I	I	H	R	D	L	K	P	M	N	I	F	I	D	E	S	R	N	V	K	I	G	D	F	G	L	.
Template Known Secondary structure		T															S		B								S		T	T	T	T																					T	T				S				G	G	G					T	T	S						S				.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		771	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.				590	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		K	A	L	R	A	D	E	N	Y	Y	K	A	Q	T	H	G	K	W	P	V	K	W	Y	A	P	E	C	I	N	Y	Y	K	F	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	A	F	S	Y	G	Q	K	P	Y	R	G	M	K	G	S	E	V	T	A	M	L	E	K	G	E	.	.	.	R	M	G	C
Query Conservation																																																																											.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																						.		.	.																			.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																						.		.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	A	M	Y	V	A	T	E	V	.	.	.	L	H	Y	N	E	K	I	D	M	Y	S	L	G	I	I	F	F	E	M	I	Y	.	P	.	.	F	S	T	G	M	E	R	V	N	I	L	K	K	L	R	S	V	S	I	E	F	P	P	D	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G			T	T	T	.	.	.					T																S	.		.	.		S	S												T	S	T	T					T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.																						.		.	.
Template SS confidence
																			886	.	.	.	890	.	.	.	.	.				.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.		.			.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	G	C	P	R	E	M	Y	D	L	M	N	L	C	W	T	Y	D	V	E	N	R	P	G	F	A	A	V	E	L	R	L	R	N	Y	Y	Y	D	V
Query Conservation
Alig confidence																															.	.	.
Template Conservation																															.	.	.
Template Sequence		D	D	N	K	M	K	V	E	K	K	I	I	R	L	L	I	D	H	D	P	N	K	R	P	G	A	R	T	L	.	.	.	L	N	S	G	W	L	P	V
Template Known Secondary structure			T	T	T	T											T		S		G	G	G	S							.	.	.		T	S	S		S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		947	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.				.	.	.	.	980	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions