Email l.a.kelley@imperial.ac.uk Description A0AV02 Date Wed Jun 6 09:26:36 BST 2012 Unique Job ID 2cf7aaf7c591a056

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c4djiA_ 100.0 15 PDB header:transport protein Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter; PDBTitle: structure of glutamate-gaba antiporter gadc 2 c3giaA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 3 c3lrcC_ 100.0 16 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 4 c2jlnA_ 100.0 10 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 5 c2xq2A_ 97.6 12 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 6 d2a65a1 97.3 12 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 7 c3dh4A_ 97.2 9 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 8 c2w8aC_ 96.7 14 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 9 c4ainB_ 90.8 13 PDB header:membrane protein Chain: B: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of betp with asymmetric protomers. 10 c3hfxA_ 74.8 13 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 11 c1oy8A_ 43.8 8 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 12 c2jdjB_ 41.3 24 PDB header:biosynthetic protein Chain: B: PDB Molecule:redy-like protein; PDBTitle: crystal structure of hapk from hahella chejuensis 13 c2yl4A_ 30.2 13 PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10 14 c4djhA_ 29.1 11 PDB header:hormone receptor/antagonist Chain: A: PDB Molecule:kappa-type opioid receptor, lysozyme; PDBTitle: structure of the human kappa opioid receptor in complex with jdtic 15 c2rh1A_ 27.0 10 PDB header:membrane protein / hydrolase Chain: A: PDB Molecule:beta-2-adrenergic receptor/t4-lysozyme chimera; PDBTitle: high resolution crystal structure of human b2-adrenergic g protein-2 coupled receptor. 16 c2kr6A_ 26.5 14 PDB header:hydrolase Chain: A: PDB Molecule:presenilin-1; PDBTitle: solution structure of presenilin-1 ctf subunit 17 c3qf4A_ 17.4 13 PDB header:transport protein Chain: A: PDB Molecule:abc transporter, atp-binding protein; PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation 18 d1jb7a3 15.3 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 19 c2vgqA_ 12.1 13 PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card 20 c2lpdA_ 11.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of a mbth-like protein from burkholderia2 pseudomallei, the etiological agent responsible for melioidosis,3 seattle structural genomics center for infectious disease target4 bupsa.13472.b 21 d2hyda2 not modelled 10.8 21 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 22 c2w2eA_ not modelled 10.4 20 PDB header:membrane protein Chain: A: PDB Molecule:aquaporin pip2-7 7; PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin,2 aqy1, in a closed conformation at ph 3.5 23 c2w9jB_ not modelled 10.4 38 PDB header:signaling protein Chain: B: PDB Molecule:signal recognition particle subunit srp14; PDBTitle: the crystal structure of srp14 from the schizosaccharomyces2 pombe signal recognition particle 24 c3g5uB_ not modelled 8.5 19 PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding 25 c3b5wE_ not modelled 8.4 19 PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba 26 c3cvoA_ not modelled 8.2 33 PDB header:transferase Chain: A: PDB Molecule:methyltransferase-like protein of unknown function; PDBTitle: crystal structure of a methyltransferase-like protein (spo2022) from2 silicibacter pomeroyi dss-3 at 1.80 a resolution 27 c3qf4B_ not modelled 8.1 13 PDB header:transport protein Chain: B: PDB Molecule:uncharacterized abc transporter atp-binding protein PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation 28 d1iwga7 not modelled 8.1 8 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 29 d1olpa2 not modelled 8.0 30 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Alpha-toxin, C-terminal domain 30 c2hg5D_ not modelled 7.9 14 PDB header:membrane protein Chain: D: PDB Molecule:kcsa channel; PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter 31 d1x6fa1 not modelled 7.8 26 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 32 c3k07A_ not modelled 7.6 11 PDB header:transport protein Chain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa 33 c3uonA_ not modelled 7.6 12 PDB header:signaling protein/antagonist Chain: A: PDB Molecule:human m2 muscarinic acetylcholine, receptor t4 lysozyme PDBTitle: structure of the human m2 muscarinic acetylcholine receptor bound to2 an antagonist 34 d1kf6c_ not modelled 7.6 8 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 35 d1kf6d_ not modelled 7.6 20 Fold:Heme-binding four-helical bundle Superfamily:Fumarate reductase respiratory complex transmembrane subunits Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD) 36 c1dsjA_ not modelled 7.5 41 PDB header:viral peptide Chain: A: PDB Molecule:vpr protein; PDBTitle: nmr solution structure of vpr50_75, 20 structures 37 c2hydB_ not modelled 7.2 21 PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866 38 d1iwga8 not modelled 7.0 8 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 39 d2cjra1 not modelled 6.9 27 Fold:Nucleocapsid protein dimerization domain Superfamily:Nucleocapsid protein dimerization domain Family:Coronavirus nucleocapsid protein 40 d1khoa2 not modelled 6.8 18 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Alpha-toxin, C-terminal domain 41 c3aqpB_ not modelled 6.8 13 PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus 42 d1ca1a2 not modelled 6.8 30 Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain) Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain) Family:Alpha-toxin, C-terminal domain 43 c2rajA_ not modelled 6.7 17 PDB header:structural protein Chain: A: PDB Molecule:sorting nexin-9; PDBTitle: so4 bound px-bar membrane remodeling unit of sorting nexin 9 44 d1jeqa1 not modelled 6.7 22 Fold:LEM/SAP HeH motif Superfamily:SAP domain Family:SAP domain 45 c3emlA_ not modelled 6.5 9 PDB header:membrane protein, receptor Chain: A: PDB Molecule:human adenosine a2a receptor/t4 lysozyme chimera; PDBTitle: the 2.6 a crystal structure of a human a2a adenosine2 receptor bound to zm241385. 46 c1ciiA_ not modelled 6.5 18 PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia 47 d1f0la3 not modelled 6.5 18 Fold:Toxins' membrane translocation domains Superfamily:Diphtheria toxin, middle domain Family:Diphtheria toxin, middle domain 48 c2kpeB_ not modelled 6.4 25 PDB header:membrane protein Chain: B: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 49 c2kpeA_ not modelled 6.4 25 PDB header:membrane protein Chain: A: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles 50 d2o4aa1 not modelled 6.3 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:CUT domain 51 c2khrA_ not modelled 6.2 24 PDB header:biosynthetic protein Chain: A: PDB Molecule:protein mbth; PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis 52 c3kdpD_ not modelled 6.2 7 PDB header:hydrolase Chain: D: PDB Molecule:sodium/potassium-transporting atpase subunit beta-1; PDBTitle: crystal structure of the sodium-potassium pump 53 c1zkaA_ not modelled 6.1 29 PDB header:transcription Chain: A: PDB Molecule:transcription factor relb; PDBTitle: nf-kb relb forms an intertwined homodimer, y300s mutant 54 c2l9bA_ not modelled 6.0 22 PDB header:transcription Chain: A: PDB Molecule:mrna 3'-end-processing protein rna15; PDBTitle: heterodimer between rna14p monkeytail domain and rna15p hinge domain2 of the yeast cf ia complex 55 d1exta2 not modelled 5.9 23 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:TNF receptor-like 56 d2yvxa3 not modelled 5.9 14 Fold:MgtE membrane domain-like Superfamily:MgtE membrane domain-like Family:MgtE membrane domain-like 57 c3v2yA_ not modelled 5.8 9 PDB header:hydrolase Chain: A: PDB Molecule:sphingosine 1-phosphate receptor 1, lysozyme chimera; PDBTitle: crystal structure of a lipid g protein-coupled receptor at 2.80a 58 c3c8vA_ not modelled 5.7 16 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution 59 d1v54d_ not modelled 5.6 17 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV 60 c2hu9B_ not modelled 5.5 20 PDB header:metal transport Chain: B: PDB Molecule:mercuric transport protein periplasmic component; PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain 61 c2y69Q_ not modelled 5.4 17 PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen 62 c1jjrA_ not modelled 5.4 28 PDB header:dna binding protein Chain: A: PDB Molecule:thyroid autoantigen; PDBTitle: the three-dimensional structure of the c-terminal dna2 binding domain of human ku70 63 d1nria_ not modelled 5.2 15 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 64 c1nriA_ not modelled 5.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 65 d1gjia1 not modelled 5.1 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain