Job Description A0AV02 Confidence 4.93% Date Wed Jun 6 09:26:36 BST 2012 Rank 69 Aligned Residues 58 % Identity 21% Template d1m9fd_ SCOP info Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Retrovirus capsid protein, N-terminal core domain Resolution 1.73

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		Y	S	Y	F	S	L	S	M	C	S	C	S	L	T	P	V	P	E	P	V	L	R	E	G	A	E	G	L	H	C	S	E	H	L	L	L	E	K	A	P	S	Y	G	S	E	G	P	A	Q	R	V	L	E	G	T	L	L	E	F	T	K	D	M	D	Q	L	L	Q	.	L	T	R	K	L	E	S	S	Q	P	R
Query Conservation																																																																						.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.																					.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		F	S	A	L	S	E	G	A	T	P	Q	D	L	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	N	T	V	G	G	H	Q	A	A	.	.	.	M	Q	M	L	K	E	T	I	N	E	E	A	A	E	W	D	R	L	H	P	V	A	M	G	P	I	A	P	G	Q	M	R
Template Known Secondary structure						T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T			S					.	.	.																			S					S	S			T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																				.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		479
Predicted Secondary structure
Query SS confidence
Query Sequence		Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		98

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions