Job Description A0AV02 Confidence 29.08% Date Wed Jun 6 09:26:36 BST 2012 Rank 14 Aligned Residues 365 % Identity 11% Template c4djhA_ PDB info PDB header:hormone receptor/antagonist Chain: A: PDB Molecule:kappa-type opioid receptor, lysozyme; PDBTitle: structure of the human kappa opioid receptor in complex with jdtic Resolution 2.90 Å

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		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320																			.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	A	S	I	P	P	G	S	L	A	A	V	G	I	S	W	F	L	Y	I	I	F	V	F	L	L	G	A	I	C	T	R	E	A	L	R	Y	D	F	L	I	A	E	K	V	S	L	M	G	F	L	F	L	L	G	L	Y	I	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	I	P	V	I	I	T	A	V	Y	S	V	V	F	V	V	G	L	V	G	N	S	L	V	M	F	V	I	I	R	Y	T	K	M	K	T	A	T	N	I	Y	I	F	N	L	A	L	A	D	A	L	V	T	T	T	M	P	F	Q	S	T	V	Y	L	M	N	S	W	P	F	G	D	V	L	C	K	I	V	L
Template Known Secondary structure		T																																G	G	G																				T	T											T	S			S
Template Predicted Secondary structure
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360				.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																									.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	C	M	G	G	L	Y	G	A	P	R	I	L	Q	C	I	A	Q	E	K	V	I	P	A	L	A	C	L	G	Q	G	K	G	P	N	K	T	P	.	.	.	V	A	A	I	C	L	T	S	L	V	T	M	A	F	V	F	V	G	Q	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.														.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		S	I	D	Y	Y	N	M	F	T	S	I	F	T	L	T	M	M	S	V	D	R	Y	I	A	.	.	V	C	H	P	V	K	A	L	D	F	R	T	P	L	K	A	K	I	I	N	I	C	I	W	L	L	S	S	S	V	G	I	S	A	I	V	L	G	G	T	K	V	R	E	D	V	D	V	I	E	C	S	L	Q
Template Known Secondary structure																										.	.	T	T		T	T	T	T	S	S	S																																		S	S	S	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
														382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	V	L	A	P	I	V	T	I	N	F	M	L	T	Y	V	A	V	D	Y	S	Y	F	S	L	S	M	C	S	C	S	L	T	P	V	P	E	P	V	L	R	E	G	A	E	G	L	H	C	S	E	H	L	L	L	E	K	A	P	S	Y	G	S	E	G	P	A	Q	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	P	D	D	D	Y	S	W	W	D	L	F	M	K	I	C	V	F	I	F	A	F	V	I	P	V	L	I	I	I	V	C	Y	T	L	M	I	L	R	L	K	S	V	R	L	L	S	G	N	I	F	E	M	L	R	I	D	E	G	L	R	L	K	I	Y	K	D	T	E	G	Y	Y	T	I	G	I	G	H	L	L
Template Known Secondary structure			S	S	S	T																T	T																									T											T										S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		V	L	E	G	T	L	L	E	F	T	K	D	M	D	Q	L	L	Q	L	T	R	K	L	E	S	S	Q	P	R	Q	G	E	G	.	N	R	T	P	E	S	Q	K	R	K	S	K	K	A	T	K	Q	T	L	Q	D	S	F	L	L	D	L	K	S	P	P	S	F	P	V	E	I	S	D	R	L	P	A	A	S	W
Query Conservation																																			.
Alig confidence																																			.
Template Conservation
Template Sequence		T	K	S	P	S	L	N	A	A	K	S	E	L	D	K	A	I	G	R	N	T	N	G	V	I	T	K	D	E	A	E	K	L	F	N	Q	D	V	D	A	A	V	R	G	I	L	R	N	A	K	L	K	P	V	Y	D	S	L	D	A	V	R	R	A	A	L	I	N	M	V	F	Q	M	G	E	T	G	V	A	G
Template Known Secondary structure			S	S	S														S	S			T	T	B																								S	T	T								S																						T
Template Predicted Secondary structure
Template SS confidence
		1034	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	Q	E	S	C	W	N	K	Q	T	S	K	S	E	G	T	Q	P	E	G	T	Y	G	E	Q	L	V	P	E	L	C	N	Q	S	E	S	S	G	E	D	F	F	L	K	S	R	L	Q	E	Q	D	V	W	R	R	S	T	S	F	Y	T	H	M	C	N	P	W	V	S	L	L	G	A	V	G	S	L	L	I
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	N	S	L	R	M	L	Q	Q	K	R	W	D	E	A	A	V	N	L	A	K	S	R	W	Y	N	Q	T	P	N	R	A	K	R	V	I	T	T	F	R	T	G	T	W	D	A	Y	R	E	K	D	R	N	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	T	R	L	V	L	V	V	V	A
Template Known Secondary structure											T	T											T	S						S														S	S	S	T	T	T	S								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1114	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.														1170	.	.	.	.	.	.	.	.	.	1180
		609	610	.	.	.	.	.		.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		M	F	V	I	Q	W	V	.	Y	T	L	V	N	M	G	V	A	A	I	V	Y	F	Y	I	G	R	A	S	P	G	L	H	L	G	S	A	S	N	F	S	F	F	R	W	M
Query Conservation									.
Alig confidence									.											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	V	V	C	W	T	P	I	H	I	F	I	L	V	E	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	A	A	L	S	S	Y	Y	F	C	I	A	L
Template Known Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.														300	.	.	.	.	.	.	.	.	.	310	.	.	.