Job Description A0AV02 Confidence 90.84% Date Wed Jun 6 09:26:36 BST 2012 Rank 9 Aligned Residues 347 % Identity 13% Template c4ainB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of betp with asymmetric protomers. Resolution 3.10 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.
Query SS confidence																																																																									.	.	.	.
Query Sequence		W	L	V	G	N	T	G	V	L	L	G	M	F	L	V	S	F	V	I	L	V	A	L	V	T	V	L	S	G	I	G	V	G	E	R	S	S	I	G	S	G	G	V	Y	S	M	I	S	S	V	L	G	G	Q	T	G	G	T	I	G	L	L	Y	V	F	G	Q	C	V	A	G	.	.	.	.	A	M	Y	I	T
Query Conservation																																																																									.	.	.	.
Alig confidence																																																																									.	.	.	.
Template Conservation
Template Sequence		V	A	M	S	T	T	M	F	H	W	T	L	H	P	W	A	I	Y	A	I	V	G	L	A	I	A	Y	S	T	F	R	V	G	R	K	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L
Template Known Secondary structure												S																				T	T				S		G	G	G	G	G						T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.						.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure															.																							.	.	.	.	.
Query SS confidence															.																							.	.	.	.	.
Query Sequence		G	F	A	E	S	I	S	D	L	L	G	L	G	.	N	I	W	A	V	R	G	I	S	V	A	V	L	L	A	L	L	G	I	N	L	A	.	.	.	.	.	G	V	K	W	I	I	R	L	Q	L	L	L	L	F	L	L	A	V	S	T	L	D	F	V	V	G	S	F	T	H	L	D	P	E	H	G	F	I	G
Query Conservation															.																							.	.	.	.	.
Alig confidence															.																							.	.	.	.	.
Template Conservation
Template Sequence		Q	I	G	A	G	L	S	A	A	N	I	I	E	D	P	S	D	W	T	I	V	G	I	V	S	V	L	T	L	A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	M	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N
Template Known Secondary structure									T	T	T	S																										T					T																							S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																																.
Query SS confidence																			.	.	.																																.
Query Sequence		Y	S	P	E	L	L	Q	N	N	T	L	P	D	Y	S	P	G	.	.	.	E	S	F	F	T	V	F	G	V	F	F	P	A	A	T	G	V	M	A	G	F	N	M	G	G	D	L	R	E	P	A	.	A	S	I	P	P	G	S	L	A	A	V	G	I	S	W	F	L	Y	I	I	F	V	F	L	L	G	A	I
Query Conservation																			.	.	.																																.
Alig confidence																			.	.	.																																.
Template Conservation
Template Sequence		Y	L	S	N	F	F	Q	M	A	G	R	T	A	M	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I	F	Y	W	A	W	W	I	S	W	S	P	F	V	G	M	F	L	A	R	I	S	R	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T
Template Known Secondary structure					T									T	T	S	G	G	G	T	T							T										T	T											T		S	S											T														T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.												.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	T	R	E	A	L	R	Y	D	F	L	I	A	E	K	V	S	.	.	.	.	.	.	.	.	.	.	.	L	M	G	F	L	F	L	L	G	L	Y	I	S	S	L	A	S	C	M	G	G	L	Y	G	A	P	R	I	L	Q	C	I	A	Q	E	K	V	I	P	A	L	A	C	L	G	Q	G	K	G	P	N	K
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.
Template Sequence		A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P	G	G	Q	I	M	G	I	I	A	M	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	M	G	T	M	S	Q	H	G	.	.	.	.	.	.	.	.	.	Q	L	E	A	N	K	W
Template Known Secondary structure								T	T					T	T	T													S	T	T																														T	T	T	T	T	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.										.	.	.	.	.	.	490
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.	.	.				.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.					.	.	.
Query SS confidence																							.	.	.					.	.	.
Query Sequence		T	P	V	A	A	I	C	L	T	S	L	V	T	M	A	F	V	F	V	G	Q	.	.	.	V	N	V	L	.	.	.	A	P	I	V	T	I	N	F	M	L	T	Y	V	A	V	D	Y	S	Y	F	S	L	S	M	C	S	C	S	L	T	P	V	P	E	P	V
Query Conservation																							.	.	.					.	.	.
Alig confidence																							.	.	.					.	.	.
Template Conservation
Template Sequence		V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	M	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q
Template Known Secondary structure																			T	T		S	T														T																				T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions