Job Description A0AV02 Confidence 5.77% Date Wed Jun 6 09:26:36 BST 2012 Rank 57 Aligned Residues 384 % Identity 9% Template c3v2yA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:sphingosine 1-phosphate receptor 1, lysozyme chimera; PDBTitle: crystal structure of a lipid g protein-coupled receptor at 2.80a Resolution 2.80 Å

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		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		N	T	L	P	D	Y	S	P	G	E	S	F	F	T	V	F	G	V	F	F	P	A	A	T	G	V	M	A	G	F	N	M	G	G	D	L	R	E	P	A	.	A	S	I	P	P	G	S	L	A	A	V	G	I	S	W	F	L	Y	I	I	F	V	F	L	L	G	A	I	C	T	R	E	A	L	R	Y	D	F	L
Query Conservation																																										.
Alig confidence																																										.																																		.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		N	I	S	A	D	K	E	N	S	I	K	L	T	S	V	V	F	I	L	I	C	C	F	I	I	L	E	N	I	F	V	L	L	T	I	W	K	T	K	K	F	H	R	P	M	Y	Y	F	I	G	N	L	A	L	S	D	L	L	A	G	V	A	Y	T	A	N	L	L	L	S	G	A	T	T	.	.	.	.	.	.
Template Known Secondary structure		G	G	G	G	S	S																																	S	T	T		S																											S	G	G	G	G	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		I	A	E	K	V	S	L	M	G	F	L	F	L	L	G	L	Y	I	S	S	L	A	S	C	M	G	G	L	Y	G	A	P	R	I	L	Q	C	I	A	Q	E	K	V	I	P	A	L	A	C	L	G	Q	G	K	G	P	N	K	T	P	V	A	A	I	C	L	T	S	L	V	T	M	A	F	V	F	V	G	.	.
Query Conservation																																																																																.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	K	L	T	P	A	Q	W	F	L	R	E	G	S	M	F	V	A	L	S	A	S	V	F	S	L	L	A	I	A	I	E	R	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	L	K	N	N	F	R	L	F	L	L	I	S	A	C	W	V	I	S	L	I	L	G	G	L	P	I	M
Template Known Secondary structure		T	T	S																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										T	T	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
																			379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	N	V	L	A	P	I	V	T	I	N	F	M	L	T	Y	V	A	V	D	Y	S	Y	F	S	L	S	M	C	S	C	S	L	T	P	V	P	E	P	V	L	R	E	G	A	E	G	L	H	C	S	E	H	L	L	L	E	K	A	P	S	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																																																.
Template Sequence		G	W	N	C	I	S	A	L	S	S	C	S	T	V	L	P	L	Y	H	K	H	Y	I	L	F	C	T	T	V	F	T	L	L	L	L	S	I	V	I	L	Y	C	R	I	Y	S	.	L	V	R	T	R	N	I	F	E	M	L	R	I	D	E	G	L	R	L	K	I	Y	K	D	T	E	G	Y	Y	T	I	G	I
Template Known Secondary structure		T		B		T	T		G	G	G	B		S	S	S	T	T	B	B																												.															S				S	S					S	S	S	S				T	T
Template Predicted Secondary structure																																																.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	E	G	P	A	Q	R	V	L	E	G	T	L	L	E	F	T	K	D	M	D	Q	L	L	Q	L	T	R	K	L	E	S	S	Q	P	R	Q	G	E	G	N	R	T	P	E	S	Q	K	R	K	S	K	K	A	T	K	Q	T	L	Q	D	S	F	L	L	D	L	K	S	P	P	S	F	P	V	E	I	S	D
Query Conservation
Alig confidence				.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.
Template Sequence		G	H	.	.	.	.	.	.	.	L	L	T	K	S	P	S	L	N	A	A	K	S	E	L	D	K	A	I	G	R	N	T	N	G	V	I	T	K	D	E	A	E	K	L	F	N	Q	D	V	D	A	A	V	R	G	I	L	R	N	A	K	L	K	P	V	Y	D	S	L	D	A	V	R	R	A	A	L	I	N	M
Template Known Secondary structure		T		.	.	.	.	.	.	.				S	S	S														T	S			T	T																							T	T		T	T	T							S
Template Predicted Secondary structure				.	.	.	.	.	.	.
Template SS confidence
		1030	.								.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	P	A	A	S	W	E	G	Q	E	S	C	W	N	K	Q	T	S	K	S	E	G	T	Q	P	E	G	T	Y	G	E	Q	L	V	P	E	L	C	N	Q	S	E	S	S	G	E	D	F	F	L	K	S	R	L	Q	E	Q	D	V	W	R	R	S	T	S	F	Y	T	H	M	C	N	P	W	V	S	L	L	G
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.
Template Sequence		V	F	Q	M	G	E	T	G	V	A	G	F	T	N	S	L	R	M	L	Q	Q	K	R	W	D	E	A	A	V	N	L	A	K	S	R	W	Y	N	Q	T	P	N	R	A	K	R	V	I	T	T	F	R	T	G	T	W	D	A	Y	A	S	R	S	S	E	N	.	.	.	.	.	.	.	.	.	V	A	L	L	K
Template Known Secondary structure					S							T										T	T												S						S															S	G	G	G	T		S	S	T	T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		1103	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.										.	1170	.	.	.
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	S	L	L	I	M	F	V	I	Q	W	V	Y	T	L	V	N	M	G	V	A	A	I	V	Y	F	Y	I	G	R	A	S	P	G	L	H	L	G	S	A	S	N	F	S	F	F	R	W	M
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.
Template Sequence		T	V	I	I	V	L	S	V	F	I	A	C	W	A	P	.	.	.	.	.	.	.	.	L	F	I	L	L	L	L	D	V	G	C	K	V	K	T	C	D	I	L	F	R	A	E	Y	F	L	V	L
Template Known Secondary structure																	.	.	.	.	.	.	.	.										T	S		T	T	T		S	T	T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.									.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.