Job Description A0AV02 Confidence 7.63% Date Wed Jun 6 09:26:36 BST 2012 Rank 33 Aligned Residues 356 % Identity 12% Template c3uonA_ PDB info PDB header:signaling protein/antagonist Chain: A: PDB Molecule:human m2 muscarinic acetylcholine, receptor t4 lysozyme PDBTitle: structure of the human m2 muscarinic acetylcholine receptor bound to2 an antagonist Resolution 3.00 Å

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		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		F	F	T	V	F	G	V	F	F	P	A	A	T	G	V	M	A	G	F	N	M	G	G	D	L	R	E	P	A	.	A	S	I	P	P	G	S	L	A	A	V	G	I	S	W	F	L	Y	I	I	F	V	F	L	L	G	A	I	C	T	R	E	A	L	R	Y	D	F	L	I	A	E	K	V	S	L	M	G	F	L
Query Conservation																															.
Alig confidence																															.																								.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.
Template Sequence		F	I	V	L	V	A	G	S	L	S	L	V	T	I	I	G	N	I	L	V	M	V	S	I	K	V	N	R	H	L	Q	T	V	N	N	Y	F	L	F	S	L	A	C	A	D	L	I	I	G	V	F	S	M	.	.	.	.	.	.	N	L	Y	T	L	Y	T	V	I	G	Y	W	P	L	G	P	V	V	C	D	L
Template Known Secondary structure																													G	G	G		S																			T			.	.	.	.	.	.									S	S	S			S
Template Predicted Secondary structure																																																							.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	L	G	L	Y	I	S	S	L	A	S	C	M	G	G	L	Y	G	A	P	R	I	L	Q	C	I	A	Q	E	K	V	I	P	A	L	A	C	L	G	Q	G	K	G	P	N	K	T	P	V	A	A	I	C	L	T	S	L	V	T	M	A	F	V	F	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.
Template Sequence		W	L	A	L	D	Y	V	V	S	N	A	S	V	M	N	L	L	I	I	S	F	D	R	Y	F	C	V	T	K	.	.	.	.	P	L	T	Y	P	V	K	R	T	T	K	M	A	G	M	M	I	A	A	A	W	V	L	S	F	I	L	W	A	P	A	I	L	F	W	Q	F	I	V	G	V	R	T	V	E	D	G
Template Known Secondary structure																															.	.	.	.	T	T	T	S	G	G	G																																	S						S	S
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
										379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	Q	V	N	V	L	A	P	I	V	T	I	N	F	M	L	T	Y	V	A	V	D	Y	S	Y	F	S	L	S	M	C	S	C	S	L	T	P	V	P	E	P	V	L	R	E	G	A	E	G	L	H	C	S	E	H	L	L	L	E	K	A	P	S	Y	G	S	E	G	P	A	Q	R	V
Query Conservation		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	C	Y	I	Q	F	F	S	N	A	A	V	T	F	G	T	A	I	A	A	F	Y	L	P	V	I	I	M	T	V	L	Y	W	H	I	S	R	A	S	K	S	R	I	N	I	F	E	M	L	R	I	D	E	G	L	R	L	K	I	Y	K	D	T	E	G	Y	Y	T	I	G	I	G	H	L	L	T	K	S	P	S
Template Known Secondary structure						G	G	G	G	S												T																			T	T												S										T	T	S						T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	G	T	L	L	E	F	T	K	D	M	D	Q	L	L	Q	L	T	R	K	L	E	S	S	Q	P	R	Q	G	E	G	N	R	T	P	E	S	Q	K	R	K	S	K	K	A	T	K	Q	T	L	Q	D	S	F	L	L	D	L	K	S	P	P	S	F	P	V	E	I	S	D	R	L	P	A	A	S	W	E	G
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		L	N	A	A	K	S	E	L	D	K	A	I	G	R	N	T	N	G	V	I	T	K	D	E	A	E	K	L	F	N	Q	D	V	D	A	A	V	R	G	I	L	R	N	A	K	L	K	P	V	Y	D	S	L	D	A	V	R	R	A	A	L	I	N	M	V	F	Q	M	G	E	T	G	V	A	G	F	T	.	N	S
Template Known Secondary structure														S	S			T	T	B																							T		T	T	T							S																					G	G	G		.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		1039	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.		.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	S	C	W	N	K	Q	T	S	K	S	E	G	T	Q	P	E	G	T	Y	G	E	Q	L	V	P	E	L	C	N	Q	S	E	S	S	G	E	D	F	F	L	K	S	R	L	Q	E	Q	D	V	W	R	R	S	T	S	F	Y	T	H	M	C	N	P	W	V	S	L	L	G	A	V	G	S	L	L	I	M	F
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	M	L	Q	Q	K	R	W	D	E	A	A	V	N	L	A	K	S	R	W	Y	N	Q	T	P	N	R	A	K	R	V	I	T	T	F	R	T	G	T	W	D	A	Y	P	P	P	S	R	E	K	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	T	I	L	A	I	L	L	A	F
Template Known Secondary structure							T	T										T	T	S						S														S	S	S	T	T	S				S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1118	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170																	.	.	.	.	.	.	.	.	.	1180	.
		611	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	Q	W	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	T	W	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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