Job Description A0AV02 Confidence 100.00% Date Wed Jun 6 09:26:36 BST 2012 Rank 2 Aligned Residues 361 % Identity 17% Template c3giaA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter Resolution 2.32 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	T	Q	L	F	M	W	E	P	V	L	F	G	T	W	D	G	V	F	T	S	C	M	I	N	I	F	G	V	V	L	F	L	R	T	G	W	L	V	G	N	T	G	V	L	L	G	M	F	L	V	S	F	V	I	L	V	A	L	V	T	V	L	S	G	I	G	V	G	E	R	S	S	I	G	S	G	G	V
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.																								.																										.
Template Conservation																.	.	.	.	.	.	.	.	.																								.																										.
Template Sequence		K	N	K	K	L	S	L	W	E	A	V	S	M	A	.	.	.	.	.	.	.	.	.	V	G	V	M	I	G	A	S	I	F	S	I	F	G	V	G	A	K	I	A	G	R	N	.	L	P	E	T	F	I	L	S	G	I	Y	A	L	L	V	A	Y	S	Y	T	K	L	G	A	K	.	I	V	S	N	A	G	P
Template Known Secondary structure						B										.	.	.	.	.	.	.	.	.									T	T	T	S									G	G	G	.																								T	T	.				T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																								.																										.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.										.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																.																																	.
Query SS confidence																.																																	.
Query Sequence		Y	S	M	I	S	S	V	L	G	G	Q	T	G	G	.	T	I	G	L	L	Y	V	F	G	Q	C	V	A	G	A	M	Y	I	T	G	F	A	E	S	I	S	D	L	L	G	L	G	.	N	I	W	A	V	R	G	I	S	V	A	V	L	L	A	L	L	G	I	N	L	A	G	V	K	W	I	I	R	L	Q	L
Query Conservation																.																																	.
Alig confidence																.																																	.
Template Conservation
Template Sequence		I	A	F	I	H	K	A	I	G	D	N	I	I	T	G	A	L	S	I	L	L	W	M	S	Y	V	I	S	I	A	L	F	A	K	G	F	A	G	Y	F	L	P	L	I	N	A	P	I	N	T	F	N	I	A	I	T	E	I	G	I	V	A	F	F	T	A	L	N	F	F	G	S	K	A	V	G	R	A	E	F
Template Known Secondary structure											S	S																																	T	T																										T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	F	L	L	A	V	S	T	L	D	F	V	V	G	S	F	T	H	L	D	P	E	H	G	F	I	G	Y	S	P	E	L	L	Q	N	N	T	L	P	D	Y	S	P	G	E	S	F	F	T	V	F	G	V	F	F	P	A	A	T	G	V	M	A	G	F	N	M	G	G	D	L	R	E	P	A	A	S	I
Query Conservation
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	V	L	V	K	L	L	I	L	G	L	F	I	F	A	G	L	I	T	I	H	P	S	Y	V	I	P	D	L	A	P	S	A	V	.	.	.	.	.	.	.	.	.	.	.	S	G	M	I	F	A	S	A	I	F	F	L	S	Y	M	G	F	G	V	I	T	N	A	S	E	H	I	E	N	P	K	K	N	V
Template Known Secondary structure																								G	G	G	T	S				S					.	.	.	.	.	.	.	.	.	.	.										G	G	G	G	G	T							T	T	G	G	G	B	S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.												.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.								.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.
Query Sequence		P	P	G	S	L	A	A	V	G	I	S	W	F	L	Y	I	I	F	V	F	L	L	G	A	I	C	T	R	E	A	L	R	Y	D	.	.	.	.	.	.	.	F	L	I	A	E	K	V	S	L	M	G	F	L	F	L	L	G	L	Y	I	S	S	L	A	S	C	M	G	G	L	Y	G	A	P	R	I	L	Q	C
Query Conservation																																				.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	R	A	I	F	I	S	I	L	I	V	M	F	V	Y	V	G	V	A	I	S	A	I	G	N	L	P	I	D	E	L	I	K	A	S	E	N	A	L	A	V	A	A	K	P	F	L	G	N	L	G	F	L	L	I	S	I	G	A	L	F	S	I	S	S	A	M	N	A	T	I	Y	G	G	A	N	V	A	Y	S
Template Known Secondary structure																									T	T	S								T	G	G	G																																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	Q	E	K	V	I	P	A	L	A	C	L	G	Q	G	K	G	P	N	K	T	P	V	A	A	I	C	L	T	S	L	V	T	M	A	F	V	F	V	G	Q	V	N	V	L	A	P	I	V	T	I	N	F	M	L	T	Y	V	A	V	D	Y	S	Y	F	S	L	S	M	C	S	C	S	L	T
Query Conservation
Alig confidence										.	.											.	.
Template Conservation										.	.											.	.
Template Sequence		L	A	K	D	G	E	L	P	.	.	E	F	F	E	R	K	V	W	F	K	.	.	S	T	E	G	L	Y	I	T	S	A	L	G	V	L	F	A	L	L	F	N	M	E	G	V	A	S	I	T	S	A	V	F	M	V	I	Y	L	F	V	I	L	S	H	Y	I	L	I	D	E	V	G	G	R	K
Template Known Secondary structure						S	S			.	.	S	S			T	T	S			S	.	.		T																	S																											T
Template Predicted Secondary structure										.	.											.	.
Template SS confidence
		302	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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