Job Description A0AV02 Confidence 4.56% Date Wed Jun 6 09:26:36 BST 2012 Rank 76 Aligned Residues 58 % Identity 14% Template c2wlvA_ PDB info PDB header:virus protein Chain: A: PDB Molecule:gag polyprotein; PDBTitle: structure of the n-terminal capsid domain of hiv-2 Resolution 1.25 Å

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		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	Y	F	S	L	S	M	C	S	C	S	L	T	P	V	P	E	P	V	L	R	E	G	A	E	G	L	H	C	S	E	H	L	L	L	E	K	A	P	S	Y	G	S	E	G	P	A	Q	R	V	L	E	G	T	L	L	E	F	T	K	D	M	D	Q	L	L	Q	L	T	R	K	L	E	S	S	Q	P	R	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		F	Q	A	L	S	E	G	C	T	P	Y	D	I	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	N	C	V	G	D	H	Q	A	A	.	.	.	M	Q	I	I	R	E	I	I	N	E	E	A	A	E	W	D	V	Q	H	P	I	P	G	P	L	P	A	G	Q	L	R	E
Template Known Secondary structure						T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T					.	.	.																		T									T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.																				.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions