Job Description A0AV02 Confidence 99.97% Date Wed Jun 6 09:26:36 BST 2012 Rank 4 Aligned Residues 378 % Identity 10% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	A	L	A	Q	P	Q	P	W	W	K	T	Q	L	F	M	W	E	P	V	L	F	G	T	W	D	G	V	F	T	S	C	M	I	N	I	F	G	V	V	L	F	L	R	T	G	W	L	V	G	N	T	G	V	L	L	G	M	F	L	V	S	F	V	I	L	V	A	L	V	T	V	L	S	G	I	G	V	G
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.
Template Sequence		L	N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	.	.	.	.	.	.	.	.	.	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	T	Q	S	A	A
Template Known Secondary structure				S	T	T	S				G	G	G			B										.	.	.	.	.	.	.	.	.						S	T										T	T	T	S																								T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.										.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		E	R	S	S	I	G	S	G	G	V	Y	S	M	I	S	S	V	L	G	G	Q	T	G	G	T	I	G	L	L	Y	V	F	G	Q	C	V	A	G	A	M	Y	I	T	G	F	A	E	S	I	S	D	L	L	G	L	.	G	N	I	W	A	V	R	G	I	S	V	A	V	L	L	A	L	L	G	I	N	L	A	G
Query Conservation																																																									.
Alig confidence						.	.	.																																																	.
Template Conservation						.	.	.
Template Sequence		I	R	W	G	.	.	.	I	N	F	T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T	G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G
Template Known Secondary structure						.	.	.							T	T	T	T	S		T	T	T	T																																																							T	T
Template Predicted Secondary structure						.	.	.
Template SS confidence
		84	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	W	I	I	R	L	Q	L	L	L	L	F	L	L	A	V	S	T	L	D	F	V	V	G	S	F	T	H	L	D	P	E	H	G	F	I	G	Y	S	P	E	L	L	Q	N	N	T	L	P	D	Y	S	P	G	E	S	F	F	T	V	F	G	V	F	F	P	A	A	T	G	V	M	A	G	F	N	M	G	G
Query Conservation
Alig confidence																																				.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		I	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	.	.	.	.	.	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V	G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K
Template Known Secondary structure																																T				.	.	.	.	.				T	T				S	S			S											T	T	T					T	T	T					T	T	B
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.						.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.							.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.
Query Sequence		D	L	R	E	P	A	A	S	I	P	P	G	S	L	A	A	V	G	I	S	W	F	L	Y	I	I	F	V	F	L	L	G	A	I	C	T	R	E	A	L	R	Y	D	.	.	.	.	.	.	F	L	I	A	E	K	V	S	L	M	G	F	L	F	L	L	G	L	Y	I	S	S	L	A	S	C	M	G	G	L	Y
Query Conservation																																													.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P	M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P
Template Known Secondary structure				T	T																																								S		S											T																				T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.			390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.
Predicted Secondary structure																																																														.	.													.
Query SS confidence																																																														.	.													.
Query Sequence		G	A	P	R	I	L	Q	C	I	A	Q	E	K	V	I	P	A	L	A	C	L	G	Q	G	K	G	P	N	K	T	P	V	A	A	I	C	L	T	S	L	V	T	M	A	F	V	F	V	G	Q	V	N	V	L	A	P	I	V	T	I	.	.	N	F	M	L	T	Y	V	A	V	D	Y	S	.	Y	F	S	L	S
Query Conservation																																																														.	.													.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																																			.	.													.
Template Conservation																		.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	.	.	.	.	.	.	.	.	.	.	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	L	N	L	L	A	S	A	L	G	P	L	A	G	I	M	I	S	D	Y	F	L	V	R
Template Known Secondary structure					T											S	T	.	.	.	.	.	.	.	.	.	.	T	T																	T		G	G	G	T														T	T													T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.											.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	C	S	C	S	L	T	P	V	P	E	P	V	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I
Template Known Secondary structure		T	T								T	B	S	S	S	T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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