Phyre 2 alignment of P41240 with c2wu6A

Job Description P41240
Confidence 100.00% Date Thu Apr 26 09:28:47 BST 2012

Rank 234 Aligned Residues 247

% Identity 24% Template c2wu6A_

PDB info PDB header:transferase Chain: A: PDB Molecule:dual specificity protein kinase clk3; PDBTitle: crystal structure of the human clk3 in complex with dki

Resolution 1.92 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.							.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																.																		.	.	.	.	.	.
Query SS confidence																												.	.	.																.																		.	.	.	.	.	.
Query Sequence	A	L	N	M	K	E	L	K	L	L	Q	T	I	G	K	G	E	F	G	D	V	M	L	G	D	Y	R	.	.	.	G	N	K	V	A	V	K	C	I	K	N	D	A	T	A	.	Q	A	F	L	A	E	A	S	V	M	T	Q	L	R	H	S	N	.	.	.	.	.	.	L	V	Q	L	L	G	V	I	V	E	E
Query Conservation																												.	.	.																.																		.	.	.	.	.	.
Alig confidence																												.	.	.																.																		.	.	.	.	.	.
Template Conservation
Template Sequence	D	W	L	Q	E	R	Y	E	I	V	G	N	L	G	E	G	T	F	G	K	V	V	E	C	L	D	H	A	R	G	K	S	Q	V	A	L	K	I	I	R	N	V	G	K	Y	R	E	A	A	R	L	E	I	N	V	L	K	K	I	K	E	K	D	K	E	N	K	F	L	C	V	L	M	S	D	W	F	N	F	H
Template Known Secondary structure				T	T	T											T	T									T	T	T	T	T										S																							T	T			S		B										T
Template Predicted Secondary structure
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.
Query Sequence	K	G	G	L	Y	I	V	T	E	Y	M	A	K	G	S	L	V	D	Y	L	R	S	R	G	R	S	V	L	G	G	D	C	L	L	K	F	S	L	D	V	C	E	A	M	E	Y	L	E	G	N	N	F	V	H	R	D	L	A	A	R	N	V	L	V	S	E	D	N	V	A	K	V	S	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.
Alig confidence		.										.																																																														.	.	.	.	.	.	.
Template Conservation		.										.
Template Sequence	G	.	H	M	C	I	A	F	E	L	L	.	G	K	N	T	F	E	F	L	K	E	N	N	F	Q	P	Y	P	L	P	H	V	R	H	M	A	Y	Q	L	C	H	A	L	R	F	L	H	E	N	Q	L	T	H	T	D	L	K	P	E	N	I	L	F	V	N	S	E	F	E	T	L	Y	N	E	H	K	S	C	E
Template Known Secondary structure	T	.										.			B								T	T	T																									T	T								G	G	G				S										T	T	T	T
Template Predicted Secondary structure		.										.
Template SS confidence
	230		.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

													332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	D	F	G	L	T	K	E	A	S	S	T	Q	D	T	G	K	L	P	V	K	W	T	A	P	E	A	L	R	E	K	K	F	S	T	K	S	D	V	W	S	F	G	I	L	L	W	E	I	Y	S	F	G	R	V	P	Y	P	R	I	P	L	K	D	V	V	P	R	V
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																																																			.
Template Conservation																																																															.
Template Sequence	E	K	S	V	K	N	T	S	I	R	V	A	D	F	G	S	A	T	F	D	H	E	H	H	T	T	I	V	A	T	R	H	Y	R	P	P	E	V	I	L	E	L	G	W	A	Q	P	C	D	V	W	S	I	G	C	I	L	F	E	Y	Y	R	.	G	F	T	L	F	Q	T	H	E	N	R	E	H	L	V	M	M
Template Known Secondary structure					S										T	T				T	T	S				S	S		S		G	G	G							T	T					T																	.	S	S		S				S	S
Template Predicted Secondary structure																																																															.
Template SS confidence
	308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

	400	.																																												.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	K	M	D	A	P	D	G	C	P	P	A	V	Y	E	V	M	K	N	C	W	H	L	D	A	A	M	R	P	S	F	L	Q	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	K	I	L	G	P	I	P	S	H	M	I	H	R	T	R	K	Q	K	Y	F	Y	K	G	G	L	V	W	D	E	N	S	S	D	G	R	Y	V	K	E	N	C	K	P	L	K	S	Y	M	L	Q	D	S	L	E	H	V	Q	L	F	D	L	M	R	R	M	L	E	F	D	P	A	Q	R	I	T	L	A	E	A
Template Known Secondary structure																S		G	G	G			T	T						T	T	S													G	G	G	G		S			S														T		S	S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.

	437	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	L	L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
	467	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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