Phyre 2 alignment of A0PJW6 with c3gf6B_

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Job Description | A0PJW6
Confidence | 6.75% | Date | Fri May 25 09:28:59 BST 2012
Rank | 70 | Aligned Residues | 32
% Identity | 22% | Template | c3gf6B_
PDB info | PDB header:unknown function | Chain: B: PDB Molecule:uncharacterized bacterial lipoprotein; | PDBTitle: crystal structure of a bacterial lipoprotein (bt_1233) from2 bacteroides thetaiotaomicron vpi-5482 at 1.69 a resolution
Resolution | 1.69 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 116 | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | S | L | R | S | V | R | S | V | V | L | R | A | G | G | Q | Q | V | T | L | T | T | H | A | P | F | G | L | G | A | H | F | T | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | P | P | A | N | F | P | E | V | F | X | C | K | G | G | X | K | . | . | L | G | T | F | D | S | F | R | R | T | C | T | F | D | I
Template Known Secondary structure |  | S | S | G | G | G |  | T | T |  |  |  |  |  |  | G | G | G | . | . | T |  |  |  |  | T | T | S | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 165 | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . |  |  | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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