Job Description P46108 Confidence 99.61% Date Wed May 9 17:51:55 BST 2012 Rank 191 Aligned Residues 82 % Identity 20% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		S	W	Y	W	G	R	L	S	R	Q	E	A	V	A	L	L	Q	G	Q	R	H	G	V	F	L	V	R	D	S	S	T	S	P	G	D	Y	V	L	S	V	S	E	N	S	R	V	.	S	H	Y	I	I	N	S	S	G	P	R	P	P	V	P	P	S	P	A	Q	P	P	P	G	V	S	P	S	R	L	R	I	G
Query Conservation																																																.
Alig confidence						.																																										.																.	.	.	.	.	.	.	.	.	.
Template Conservation						.																																																										.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	.	.	.	.	.	.	.	.	.	.	L	G	K	V	L	V	V	E
Template Known Secondary structure		T	T			.												T	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S	.	.	.	.	.	.	.	.	.	.			S					T
Template Predicted Secondary structure						.																																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.											.	.	70	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	E	F	D	S	L	P	A	L	L	E	F	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	R	Y	H	D	L	D	Q	I	I	V	E	Y
Template Known Secondary structure		T				S	S								T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions