Job Description P46108 Confidence 99.59% Date Wed May 9 17:51:55 BST 2012 Rank 202 Aligned Residues 142 % Identity 15% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		S	W	Y	W	G	R	L	S	R	Q	E	A	V	A	L	L	Q	G	Q	R	H	G	V	F	L	V	R	D	S	S	T	S	P	G	D	Y	V	L	S	V	S	E	N	S	R	V	.	S	H	Y	I	I	N	S	S	G	P	R	P	P	V	P	P	S	P	A	Q	P	P	P	G	V	S	P	S	R	L	R	I	G
Query Conservation																																																.
Alig confidence						.														.											.																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.														.											.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	C	S
Template Known Secondary structure		T	T			.														.	S	S									.	S	S	T	T										T	T											S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T
Template Predicted Secondary structure						.														.											.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		793	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.		810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.																			.	.	850	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																																										.	.	.																					.	.
Query SS confidence																																										.	.	.																					.	.
Query Sequence		D	Q	E	F	D	S	L	P	A	L	L	E	F	Y	K	I	H	Y	L	D	T	T	T	L	I	E	P	V	S	R	S	R	Q	G	S	G	V	I	L	R	.	.	.	Q	E	E	A	E	Y	V	R	A	L	F	D	F	N	G	N	D	E	E	D	.	.	L	P	F	K	K	G	D	I	L	R	I	R	D	K	P
Query Conservation																																										.	.	.																					.	.
Alig confidence																																										.	.	.																					.	.
Template Conservation
Template Sequence		N	K	H	F	E	D	I	D	E	V	I	S	V	Y	V	R	P	I	L	R	N	L	K	S	I	K	A	H	A	K	Y	F	N	S	P	E	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V
Template Known Secondary structure		T				S	S								T														S	T	T	B		S		T	T	T	S						T			S	S	S									S	S	S	T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		852	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.
		166	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	Q	W	W	N	A	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	M	L	T	Y	N	N	S
Template Known Secondary structure		S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		932	.	.	.	.	.	.	.	940

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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