Job Description Q15811 Confidence 100.00% Date Tue Apr 3 14:58:12 BST 2012 Rank 8 Aligned Residues 341 % Identity 28% Template c3t06E_ PDB info PDB header:signaling protein Chain: E: PDB Molecule:rho guanine nucleotide exchange factor 11; PDBTitle: crystal structure of the dh/ph fragment of pdzrhogef with n-terminal2 regulatory elements in complex with human rhoa Resolution 2.84 Å

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		1218	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	Q	W	C	S	D	L	H	L	L	D	M	L	T	P	T	E	R	K	R	Q	G	Y	I	H	E	L	I	V	T	E	E	N	Y	V	N	D	L	Q	L	V	T	E	I	F	Q	K	P	L	M	E	S	E	L	L	T	E	K	E	V	A	M	I	F	V	N	W	K	E	L	I	M	C	N	I	K	L	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	W	Q	H	T	V	G	K	D	V	V	A	G	L	T	Q	R	E	I	D	R	Q	E	V	I	N	E	L	F	V	T	E	A	S	H	L	R	T	L	R	V	L	D	L	I	F	Y	Q	R	M	K	K	E	N	L	M	P	R	E	E	L	A	R	L	F	P	N	L	P	E	L	I	E	I	H	N	S	W	C	E
Template Known Secondary structure			T	T	T	T	T	S	S	S	G	G	G	G			S																														T							T	T	S	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.
		1298	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.							.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		A	L	R	V	R	K	K	M	S	G	E	K	M	P	V	K	M	I	G	D	I	L	S	A	Q	.	.	.	.	.	.	L	P	H	M	Q	P	Y	I	R	F	C	S	R	Q	L	N	G	A	A	L	I	Q	Q	K	T	D	E	A	P	D	F	K	E	F	V	K	R	L	A	M	D	P	R	C	K	G	M	P	L
Query Conservation																											.	.	.	.	.	.
Alig confidence									.	.	.																.	.	.	.	.	.
Template Conservation									.	.	.
Template Sequence		A	M	K	K	L	R	E	.	.	.	E	G	P	I	I	K	E	I	S	D	L	M	L	A	R	F	D	G	P	A	R	E	E	L	Q	Q	V	A	A	Q	F	C	S	Y	Q	S	I	A	L	E	L	I	K	T	K	Q	R	K	E	S	R	F	Q	L	F	M	Q	E	A	E	S	H	P	Q	C	R	R	L	Q	L
Template Known Secondary structure									.	.	.	S		S	S													S	T																T																											T	S	G	G	G	T	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
		795	.	.	.	.	800	.				.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.
		1372	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.				.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		S	S	F	I	L	K	P	M	Q	R	V	T	R	Y	P	L	I	I	K	N	I	L	E	N	T	P	E	N	H	P	D	H	S	H	L	K	H	A	L	E	K	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	.	.	.	E	G	L	S	E	Q
Query Conservation																																																																									.	.	.
Alig confidence																																																																									.	.	.
Template Conservation
Template Sequence		R	D	L	I	I	S	E	M	Q	R	L	T	K	Y	P	L	L	L	E	S	I	I	K	H	T	E	G	G	T	S	E	H	E	K	L	C	R	A	R	D	Q	C	R	E	I	L	K	Y	V	N	E	A	V	K	Q	T	E	N	R	H	R	L	E	G	Y	Q	K	R	L	D	A	T	A	L	E	R	A	S	N	P
Template Known Secondary structure					T	T																			T	S		S	S	S																																					G	G	G	B				T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		872	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.
		1449	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.				.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		L	V	F	N	S	V	T	N	C	L	G	P	R	K	F	L	H	S	G	K	L	Y	K	A	K	S	N	K	.	.	.	E	L	Y	G	F	L	F	N	D	F	L	L	L	T	Q	I	T	K	P	L	G	S	S	G	T	D	K	V	F	S	P	K	S	N	L	Q	Y	K	M	Y	K	T	P	I	F	L	N	E	V
Query Conservation																														.	.	.
Alig confidence																														.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	A	E	F	K	S	L	D	L	T	T	R	K	M	I	H	E	G	P	L	T	W	R	I	S	K	D	K	T	L	D	L	H	V	L	L	L	E	D	L	L	V	L	L	Q	K	Q	D	E	K	L	L	L	K	C	.	.	.	.	.	.	.	.	.	.	H	S	K	T	F	S	P	V	L	K	L	N	A	V
Template Known Secondary structure					T	T	T	T			G	G	G	S													S	S	S											S	S									S	S							.	.	.	.	.	.	.	.	.	.	B				B		S				G	G	G
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		952	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.											.	.	1010	.	.	.	.	.	.	.	.	.	1020	.
		1526	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.			.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		L	V	K	L	P	T	D	P	S	G	D	E	P	I	F	H	I	S	H	I	D	.	.	R	V	Y	T	L	R	A	E	S	I	N	E	R	T	A	W	V	Q	K	I	K	A	A	S	E
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		L	I	R	S	V	A	T	D	K	R	A	F	F	I	I	C	T	S	K	L	G	P	P	Q	I	Y	E	L	V	A	L	T	S	S	D	K	N	T	W	M	E	L	L	E	E	A	V	R
Template Known Secondary structure							T	T	S	T	T									S	S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		1032	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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