Job Description Q15811 Confidence 97.88% Date Tue Apr 3 14:58:12 BST 2012 Rank 313 Aligned Residues 141 % Identity 21% Template c3sibA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:ure3-bp sequence specific dna binding protein; PDBTitle: crystal structure of ure3-binding protein, wild-type Resolution 1.90 Å

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		13	.	.							.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.			.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure					.	.	.	.	.	.																						.																	.	.
Query SS confidence					.	.	.	.	.	.																						.																	.	.
Query Sequence		D	I	W	.	.	.	.	.	.	A	I	T	V	E	E	R	A	K	H	D	Q	Q	F	H	S	L	K	P	I	S	.	G	F	I	T	G	D	Q	A	R	N	F	F	F	Q	S	G	.	.	L	P	Q	P	V	L	A	Q	I	W	A	L	A	D	M	N	N	D	G	R	M	D	Q	V	E	F	S	I	A	M	K
Query Conservation					.	.	.	.	.	.																						.																	.	.
Alig confidence					.	.	.	.	.	.																						.																	.	.
Template Conservation
Template Sequence		N	T	W	W	F	P	L	L	N	T	I	P	L	D	Q	Y	T	R	I	Y	Q	W	F	M	G	V	D	R	D	R	S	G	T	L	E	I	N	E	L	M	M	G	Q	F	P	G	G	I	R	L	S	P	Q	T	A	L	R	M	M	R	I	F	D	T	D	F	N	G	H	I	S	F	Y	E	F	M	A	M	Y	K
Template Known Secondary structure		T	S	T	T	G	G	G	G	G	G																		T	T			S	S	B											G	G	G																	T	T		S	S		B
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	K	L	K	L	Q	G	Y	Q	L	P	S	A	L	P	P	V	M	K	Q	Q	P	V	A	I	S	S	A	P	A	F	G	M	G	G	I	A	S	M	P	P	L	T	A	V	A	P	V	P	M	G	S	I	P	V	V	G	M	S	P	T	L	V	S	S	V	P	T	A	A	V	P	P	L	A	N	G	A	P
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	M	E	L	A	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	I	Q	P	L	P	A	F	A	H	P	A	A	T	L	P	K	S	S	S	F	S	R	S	G	P	G	S	Q	L	N	T	K	L	Q	K	A	Q	S	F	D	V	A	S	V	P	P	V	A	E	W	A	V	P	Q	S	S	R	L	K	Y	R	Q	L	F	N	S	H	D	K	T	M	S	G	H	L	T	G	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	V	M	N	D	R	N	R	S	G	T	L	E	P	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T			S				G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		Q	A	R	T	I	L	M	Q	S	S	.	.	L	P	Q	A	Q	L	A	S	I	W	N	L	S	D	I	D	Q	D	G	K	L	T	A	E	E	F	I	L	A	M	H	L	I	D	V	A	M	S
Query Conservation												.	.
Alig confidence												.	.															.
Template Conservation																												.
Template Sequence		E	I	L	P	A	L	Q	Q	L	G	F	Y	I	N	Q	R	T	S	L	L	L	H	R	L	F	A	.	R	G	M	A	F	C	D	L	N	C	W	I	A	I	C	A	F	A	A	Q	T	R	S
Template Known Secondary structure		G									T																S	.	T	T		S	S
Template Predicted Secondary structure																												.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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