Job Description Q15811 Confidence 100.00% Date Tue Apr 3 14:58:12 BST 2012 Rank 14 Aligned Residues 304 % Identity 28% Template c2z0qA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 3; PDBTitle: crystal structure of dh-ph domain of rhogef3(xpln) Resolution 1.79 Å

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		1229	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	L	T	P	T	E	R	K	R	Q	G	Y	I	H	E	L	I	V	T	E	E	N	Y	V	N	D	L	Q	L	V	T	E	I	F	Q	K	P	L	M	E	S	E	L	L	T	E	K	E	V	A	M	I	F	V	N	W	K	E	L	I	M	C	N	I	K	L	L	K	A	L	R	V	R	K	K	M	S	G	E
Query Conservation
Alig confidence																																																																														.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		Q	V	L	T	A	K	E	I	K	R	Q	E	A	I	F	E	L	S	Q	G	E	E	D	L	I	E	D	L	K	L	A	K	K	A	Y	H	D	P	X	L	K	L	S	I	X	T	E	Q	E	L	N	Q	I	F	G	T	L	D	S	L	I	P	L	H	E	E	L	L	S	Q	L	R	D	V	R	K	.	.	.	P
Template Known Secondary structure																																				T							T	T	S	S										T	T																					.	.	.	T
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80
		1309	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	P	V	K	M	I	G	D	I	L	S	A	Q	L	P	H	M	Q	P	Y	I	R	F	C	S	R	Q	L	N	G	A	A	L	I	Q	Q	K	T	D	E	A	P	D	F	K	E	F	V	K	R	L	A	M	D	P	R	C	K	G	M	P	L	S	S	F	I	L	K	P	M	Q	R	V	T	R	Y	P	L	I
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	S	T	E	H	V	G	P	I	L	V	G	W	L	P	C	L	S	S	Y	D	S	Y	C	S	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	A	K	A	L	L	D	H	K	K	Q	D	H	R	V	Q	D	F	D	L	W	N	F	L	D	I	P	R	S	R	L	V	K	Y	P	L	L
Template Known Secondary structure		T	S			S										G	G	G	G	G										.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T									T	T	T	G	G	G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.															.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		1389	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	N	I	L	E	N	T	P	E	N	H	P	D	H	S	H	L	K	H	A	L	E	K	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	S	E	Q	L	V	F	N	S	V	T	N	C	L	G	P	R	K	F	L	H	S	G	K
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.
Template Sequence		L	R	E	I	L	R	H	T	P	N	D	N	P	D	Q	Q	H	L	E	E	A	I	N	I	I	Q	G	I	V	A	E	I	N	T	K	T	G	E	S	E	C	R	Y	Y	K	E	R	L	L	Y	L	E	E	G	Q	K	D	S	L	I	D	.	.	.	.	.	.	.	.	.	S	S	R	V	L	C	C	H	G	E
Template Known Secondary structure								T	S		T	T	S	T																																							S	T	T								.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220										.	.	.	.	.	.	.	.	.	230
		1469	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	K	A	K	S	N	K	E	L	Y	G	F	L	F	N	D	F	L	L	L	T	Q	I	T	K	P	L	G	S	S	G	T	D	K	V	F	S	P	K	S	N	L	Q	Y	K	M	Y	K	T	P	I	F	L	N	E	V	L	V	K	L	P	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																									.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	.	N	N	R	G	V	K	L	H	V	F	L	F	Q	E	V	L	V	I	T	R	A	V	T	H	.	.	.	.	.	.	.	.	.	.	.	.	N	E	Q	L	C	Y	Q	L	Y	R	Q	P	I	P	V	K	D	L	T	L	E	D	L	Q	D	G	E	V	R	L	G	G	S	L	A	F	S	N	N	E	R
Template Known Secondary structure				.		T	T	S									S	S											.	.	.	.	.	.	.	.	.	.	.	.	T	T							S	S					G	G	G								T	T	T	S				S					S
Template Predicted Secondary structure				.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.													.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
			1533	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	S	G	D	E	P	I	F	H	I	S	H	I	D	R	V	Y	T	L	R	A	E	S	I	N	E	R	T	A	W	V	Q	K	I	K	A	A	S	E
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		V	K	N	F	F	R	V	S	F	K	N	G	S	Q	S	Q	T	H	S	L	Q	A	N	D	T	F	N	K	Q	Q	W	L	N	C	I	R	Q	A	K	E
Template Known Secondary structure		T	S	S									G	G	G									S	S
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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