Job Description Q15811 Confidence 100.00% Date Tue Apr 3 14:58:12 BST 2012 Rank 18 Aligned Residues 317 % Identity 16% Template c2rgnB_ PDB info PDB header:signaling protein complex Chain: B: PDB Molecule:rhoa/rac/cdc42 exchange factor; PDBTitle: crystal structure of p63rhogef complex with galpha-q and rhoa Resolution 3.50 Å

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		1226	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.			.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.		.	.	.	.	.	1300	.	.
Predicted Secondary structure																																																		.	.																						.
Query SS confidence																																																		.	.																						.
Query Sequence		H	L	L	D	M	L	T	P	T	E	R	K	R	Q	G	Y	I	H	E	L	I	V	T	E	E	N	Y	V	N	D	L	Q	L	V	T	E	I	F	Q	K	P	L	M	E	S	E	L	L	.	.	T	E	K	E	V	A	M	I	F	V	N	W	K	E	L	I	M	C	N	I	K	.	L	L	K	A	L	R	V	R
Query Conservation																																																		.	.																						.
Alig confidence																																																		.	.																						.
Template Conservation
Template Sequence		S	E	E	E	Q	K	K	K	A	L	E	R	S	M	Y	V	L	S	E	L	V	E	T	E	K	M	Y	V	D	D	L	G	Q	I	V	E	G	Y	M	A	T	M	A	A	Q	G	V	P	E	S	L	R	G	R	D	R	I	V	F	G	N	I	Q	Q	I	Y	E	W	H	R	D	Y	F	L	Q	E	L	Q	R	C
Template Known Secondary structure								S																													T	T												S	S	S	G	G	G						T	T											T
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		1303	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	M	S	G	E	K	M	P	V	K	M	I	G	D	I	L	S	A	Q	L	P	H	M	Q	P	Y	I	R	F	C	S	R	Q	L	N	G	A	A	L	I	Q	Q	K	T	D	E	A	P	D	F	K	E	F	V	K	R	L	A	M	D	P	R	C	K	G	M	P	L	S	S	F	I	L	K	P	M	Q	R	V
Query Conservation
Alig confidence								.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Sequence		L	K	D	P	D	W	.	.	.	.	.	.	L	A	Q	L	F	I	K	H	E	R	R	L	H	M	Y	V	V	Y	C	Q	N	K	P	K	S	E	H	V	V	S	E	F	G	D	.	.	.	.	.	.	.	S	Y	F	E	E	L	R	Q	Q	L	G	H	R	L	Q	L	N	D	L	L	I	K	P	V	Q	R	I
Template Known Secondary structure			S		G	G	G	.	.	.	.	.	.								T	T	T	T	T									T	S								T	T	T	S		.	.	.	.	.	.	.													S	S						T	T
Template Predicted Secondary structure								.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.							.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		1383	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	Y	P	L	I	I	K	N	I	L	E	N	T	P	E	N	H	P	D	H	S	H	L	K	H	A	L	E	K	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	S	E	Q	L	V	F	N	S	V	T	N	C	L	G	P	R	K
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	Y	Q	L	L	L	K	D	F	L	K	Y	Y	N	R	A	G	M	D	T	A	D	L	E	Q	A	V	E	V	M	C	F	V	P	K	R	C	N	D	M	M	T	L	G	R	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	E	G	K	L	T	A	Q	G	K
Template Known Secondary structure		T	S												T	S	S	S		S																									G	G	G		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S		S	T	T	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.																						.	.	.	.	.	.	350	.	.	.	.
		1463	.	.	.	.	.	.			1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		F	L	H	S	G	K	L	.	.	Y	K	A	K	S	N	K	E	L	Y	G	F	L	F	N	D	F	L	L	L	T	Q	I	T	K	P	L	G	S	S	G	T	D	K	V	F	S	P	K	S	N	L	Q	Y	K	M	Y	K	T	P	I	F	L	N	E	V	L	V	K	L	P	T	D	P	S	G	D	E	P	I	F
Query Conservation									.	.
Alig confidence									.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	G	Q	D	T	F	W	V	T	E	P	S	R	G	R	E	R	R	V	F	L	F	E	Q	I	I	I	F	S	E	A	L	G	P	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	K	N	S	I	K	V	S	C	L	G	L	E	G	N	L	Q	G	D	P	C	R	F	A	L
Template Known Secondary structure																									S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								G	G	G						S	G	G	G		T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.																		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		1541	.				.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		H	I	.	.	.	S	H	I	D	R	V	Y	T	L	R	A	E	S	I	N	E	R	T	A	W	V	Q	K	I	K	A	A	S	E	L	Y	I	E	T	E	K	K	K	R	E	K	A	Y	L	V	R	S	Q	R	A	T
Query Conservation				.	.	.
Alig confidence				.	.	.
Template Conservation
Template Sequence		T	S	R	G	P	E	G	G	I	Q	R	Y	V	L	Q	A	A	D	P	A	I	S	Q	A	W	I	K	H	V	A	Q	I	L	E	S	Q	R	D	F	L	N	A	L	Q	S	P	I	E	Y	Q	R	R	E	S	Q	T
Template Known Secondary structure						S	S	S										S	S																										T	S
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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