Job Description Q15811 Confidence 100.00% Date Tue Apr 3 14:58:12 BST 2012 Rank 1 Aligned Residues 370 % Identity 21% Template c2dx1A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 4; PDBTitle: crystal structure of rhogef protein asef Resolution 2.36 Å

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		1155	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	C	Q	V	I	G	M	Y	D	Y	T	A	Q	N	D	D	E	L	A	F	N	K	G	Q	I	I	N	V	L	N	K	E	D	P	D	W	W	K	G	E	V	N	G	Q	V	G	L	F	P	S	N	Y	V	K	L	T	T	D	M	D	P	S	Q	Q	W	C	S	D	L	H	L	L	D	M	L	T	P	T
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	S	V	V	C	A	E	A	L	W	D	H	V	T	X	D	D	Q	E	L	G	F	K	A	G	D	V	I	E	V	X	D	A	T	N	R	E	W	W	W	G	R	V	A	D	G	E	G	W	F	P	A	S	F	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	V	N	Q	D	A	Q	S	S	K
Template Known Secondary structure		T								S	S		B					T	T	B			B		T	T										S	S	S							S	S							G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.														.	180	.	.	.	.	.	.	.	.	.
		1235	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.		1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		E	R	K	R	Q	G	Y	I	H	E	L	I	V	T	E	E	N	Y	V	N	D	L	Q	L	V	T	E	I	F	Q	K	P	L	M	E	.	S	E	L	L	T	E	K	E	V	A	M	I	F	V	N	W	K	E	L	I	M	C	N	I	K	L	L	K	A	L	R	V	R	K	K	M	S	G	E	K	M	P	V	K
Query Conservation																																					.
Alig confidence																																					.																																		.	.
Template Conservation																																																																							.	.
Template Sequence		D	Q	X	R	T	N	V	I	N	E	I	L	S	T	E	R	D	Y	I	K	H	L	R	D	I	C	E	G	Y	V	R	Q	C	R	K	R	A	D	X	F	S	E	E	Q	L	R	T	I	F	G	N	I	E	D	I	Y	R	C	Q	K	A	F	V	K	A	L	E	Q	R	.	.	F	N	R	E	R	P	H	L	S
Template Known Secondary structure																														T					T	T		T	T	T											T	T																	T	T	.	.			S	S	S	G	G	G
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.
		1314	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	G	D	I	L	S	A	Q	L	P	H	M	Q	P	Y	I	R	F	C	S	R	Q	L	N	G	A	A	L	I	Q	Q	K	T	D	E	A	P	D	F	K	E	F	V	K	R	L	A	M	D	P	R	C	K	G	M	P	L	S	S	F	I	L	K	P	M	Q	R	V	T	R	Y	P	L	I	I	K	N	I	L
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		E	L	G	A	C	F	L	E	H	Q	A	D	F	Q	I	Y	S	E	Y	C	N	N	H	P	N	A	C	V	E	L	S	R	L	T	.	K	L	S	K	Y	V	Y	F	F	E	A	C	R	L	L	Q	K	X	I	D	I	S	L	D	G	F	L	L	T	P	V	Q	K	I	C	K	Y	P	L	Q	L	A	E	L	L
Template Known Secondary structure										T						T																				.	T																T			S
Template Predicted Secondary structure																																				.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		1394	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		E	N	T	P	E	N	H	P	D	H	S	H	L	K	H	A	L	E	K	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	S	E	Q	L	V	F	N	S	V	T	N	C	L	G	P	R	K	F	L	H	S	G	K	L	Y	K	.	.
Query Conservation																																																																																.	.
Alig confidence																																																				.	.	.	.	.	.	.	.																					.	.
Template Conservation																																																				.	.	.	.	.	.	.	.
Template Sequence		K	Y	T	H	P	Q	H	R	D	F	K	D	V	E	A	A	L	H	A	X	K	N	V	A	Q	L	I	N	E	R	K	R	R	L	E	N	I	D	K	I	A	Q	W	Q	S	S	I	E	D	W	.	.	.	.	.	.	.	.	E	G	E	D	L	L	V	R	S	S	E	L	I	Y	S	G	E	L	T	R	V	T
Template Known Secondary structure			T	S		T	T		T	T																																						S	B	S		.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.									.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
				1472	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	A	K	S	N	K	E	L	Y	G	F	L	F	N	D	F	L	L	L	T	Q	I	T	K	P	L	G	S	S	G	T	D	K	V	F	S	P	K	S	N	L	Q	Y	K	M	Y	K	T	P	I	F	L	N	E	V	L	V	K	L	P	T	D	P	S	G	D	E	P	I	F	H	I	S	H	I	D	R	V	Y
Query Conservation		.	.
Alig confidence		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.											.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.											.	.	.	.
Template Sequence		Q	P	Q	A	K	S	Q	Q	R	X	F	F	L	F	D	H	Q	L	I	Y	C	K	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	R	R	D	V	L	Y	Y	K	G	R	L	D	X	D	G	L	E	V	.	.	.	.	.	.	.	V	I	K	N	A	F	R	L	H	S	.	.	.	.	H
Template Known Secondary structure		S	S	S	S											T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T		T	T										T	T	T				.	.	.	.	.	.	.											.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.															.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.								.	.	.	.	.	.	490	.	.	.					.
		1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	R	A	E	S	I	N	E	R	T	A	W	V	Q	K	I	K	A	A	S	E	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	C	T	R	K	P	E	Q	K	Q	R	W	L	K	A	F	A	R	E	R	E	Q	V
Template Known Secondary structure						S
Template Predicted Secondary structure
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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