Phyre 2 alignment of Q15811 with c1ntyA

Job Description Q15811
Confidence 99.97% Date Tue Apr 3 14:58:12 BST 2012

Rank 21 Aligned Residues 290

% Identity 21% Template c1ntyA_

PDB info PDB header:signaling protein Chain: A: PDB Molecule:triple functional domain protein; PDBTitle: crystal structure of the first dh/ph domain of trio to 1.7 a

Resolution 1.70 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1236	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270					.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence	R	K	R	Q	G	Y	I	H	E	L	I	V	T	E	E	N	Y	V	N	D	L	Q	L	V	T	E	I	F	Q	K	P	L	M	E	S	.	.	.	.	E	L	L	T	E	K	E	V	A	M	I	F	V	N	W	K	E	L	I	M	C	N	I	K	L	L	K	A	L	R	V	R	K	K	M	S	G	E	K	M	P
Query Conservation																																				.	.	.	.
Alig confidence																																				.	.	.	.																																	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.
Template Sequence	R	R	K	E	F	I	M	A	E	L	I	Q	T	E	K	A	Y	V	R	D	L	R	E	C	M	D	T	Y	L	W	E	M	T	S	G	V	E	E	I	P	P	G	I	V	N	K	E	L	I	I	F	G	N	M	Q	E	I	Y	E	F	H	N	N	I	F	L	K	E	L	E	K	.	.	.	.	.	Y	E	Q	L
Template Known Secondary structure																																					S				T	T	T	T	T							T	T											T								.	.	.	.	.	T	T	T
Template Predicted Secondary structure																																																																								.	.	.	.	.
Template SS confidence
	1232	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.						.	.	.	.

	1312	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	K	M	I	G	D	I	L	S	A	Q	L	P	H	M	Q	P	Y	I	R	F	C	S	R	Q	L	N	G	A	A	L	I	Q	Q	K	T	D	E	A	P	D	F	K	E	F	V	K	R	L	A	M	D	P	R	C	K	G	M	P	L	S	S	F	I	L	K	P	M	Q	R	V	T	R	Y	P	L	I	I	K	N
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence	P	E	D	V	G	H	C	F	V	T	W	A	D	K	F	Q	M	Y	V	T	Y	C	K	N	K	P	D	S	T	Q	L	I	L	E	H	A	G	S	Y	F	D	E	I	.	.	.	.	.	.	.	Q	Q	R	H	G	L	A	N	S	I	S	S	Y	L	I	K	P	V	Q	R	I	T	K	Y	Q	L	L	L	K	E
Template Known Secondary structure	G	G	G	T							T	T	T	T	T																					T	T	T						.	.	.	.	.	.	.					T		S	S							T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
	1307	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.								1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.

	1392	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	L	E	N	T	P	E	N	H	P	D	H	S	H	L	K	H	A	L	E	K	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	S	E	Q	L	V	F	N	S	V	T	N	C	L	G	P	R	K	F	L	H	S	G	K	L	Y	K
Query Conservation
Alig confidence												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	L	T	C	C	E	E	G	K	G	E	.	.	.	I	K	D	G	L	E	V	M	L	S	V	P	K	R	A	N	D	A	M	H	L	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	G	F	D	E	N	I	E	S	Q	G	E	L	I	L	Q	E	S	F	Q	V
Template Known Secondary structure				T	S		T	T		T	T	.	.	.																						T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S			S		S	G	G	G
Template Predicted Secondary structure												.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1380	.	.	.	.	.	.	.	.	.	1390				.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.																						.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.

							1472	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.	.
Predicted Secondary structure	.	.	.	.	.	.																																																																									.	.
Query SS confidence	.	.	.	.	.	.																																																																									.	.
Query Sequence	.	.	.	.	.	.	A	K	S	N	K	E	L	Y	G	F	L	F	N	D	F	L	L	L	T	Q	I	T	K	P	L	G	S	S	G	T	D	K	V	F	S	P	K	S	N	L	Q	Y	K	M	Y	K	T	P	I	F	L	N	E	V	L	V	K	L	P	T	D	P	S	G	D	E	P	I	F	H	I	S	.	.
Query Conservation	.	.	.	.	.	.																																																																									.	.
Alig confidence	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	W	D	P	K	T	L	I	R	K	G	R	E	R	H	L	F	L	F	E	M	S	L	V	F	S	K	E	V	K	D	.	.	.	.	.	.	.	.	.	.	.	.	S	S	G	R	S	K	Y	L	Y	K	S	K	L	F	T	S	E	L	G	V	T	E	H	V	E	G	D	P	C	K	F	A	L	W	V	G	R	T
Template Known Secondary structure			S	S	S	S	S												S	S											.	.	.	.	.	.	.	.	.	.	.	.	T	T													G	G	G								T	T		T	T							S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1436	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.													.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.

		1544	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	H	I	D	R	V	Y	T	L	R	A	E	S	I	N	E	R	T	A	W	V	Q	K	I	K	A	A	S	E	L	Y
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	P	T	S	D	N	K	I	V	L	K	A	S	S	I	E	N	K	Q	D	W	I	K	H	I	R	E	V	I	Q	E	R
Template Known Secondary structure			T	T	T							S	S																		T
Template Predicted Secondary structure
Template SS confidence
	1504	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions