Return to main results Retrieve Phyre Job Id

Job DescriptionP56597
Confidence100.00%DateThu Apr 26 09:17:35 BST 2012
Rank11Aligned Residues147
% Identity29%Templated1s57a_
SCOP infoFerredoxin-like Nucleoside diphosphate kinase, NDK Nucleoside diphosphate kinase, NDK
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20...... ...30.........40.........50.........60.........70.........80.......
Predicted Secondary structure 





..















Query SS confidence 
















. .




























































Query Sequence  IYVEKTLAIIKPDIVDK. . EEEIQDIILRSGFTIVQRRKLRLSPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARH
Query Conservation    




 






  ..   

  
   

 

  
   

 
 
  

    

  
  

  




 




 
 
Alig confidence 
















..




























































Template Conservation     
 

 






     
 

  
   

 
   
   

 
 
   
        
  

  
 


 


 
 
 
Template Sequence  EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGV
Template Known Secondary structure 



TT
T



TGGGTTSSSTSS
T
Template Predicted Secondary structure 





















Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   88.90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 




























Query SS confidence 









































































Query Sequence  KAISYWLELLGPNNSLVAKETHPDSLRAIYGTDDLRNALHGSNDFAAAEREIRFMFPEVIVEPIPIGQAAKDYL
Query Conservation 


   
 
 




  
    
 



 

     
 

 


 
 
 


 



    
          

Alig confidence 


















...







































..









Template Conservation 


   
 
 




  
 ...
 


   
     
 

 


 
 
 


  

   
  ..          
Template Sequence  GVVASARKLIGKTDPLQAE. . . PGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELC. . KWDSALATWL
Template Known Secondary structure  T

SSTTTS
...TTS

BTTB


SSS
TT


..



TT
Template Predicted Secondary structure 





...















..





Template SS confidence 









































































   161........170......... 180.........190.........200.........210......... 220.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions