Return to main results Retrieve Phyre Job Id

Job DescriptionP56597
Confidence100.00%DateThu Apr 26 09:17:35 BST 2012
Rank5Aligned Residues135
% Identity29%Templated1pkua1
SCOP infoFerredoxin-like Nucleoside diphosphate kinase, NDK Nucleoside diphosphate kinase, NDK
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20...... ...30.........40.........50.........60.........70.........80.........
Predicted Secondary structure 



..















Query SS confidence 














. .






























































Query Sequence  VEKTLAIIKPDIVDK. . EEEIQDIILRSGFTIVQRRKLRLSPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARHKA
Query Conservation 




 






  ..   

  
   

 

  
   

 
 
  

    

  
  

  




 




 
 

Alig confidence 














..






























































Template Conservation   
 

 






       

  
   

 
   
   

 
 
   
    
      

  




 
 
 
 
 

Template Sequence  MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV
Template Known Secondary structure 


TT
T



SGGGTTSTTSS
STT
Template Predicted Secondary structure 























Template SS confidence 















































































   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   90.........100.........110.........120.........130.........140.........
Predicted Secondary structure 
























Query SS confidence 



























































Query Sequence  ISYWLELLGPNNSLVAKETHPDSLRAIYGTDDLRNALHGSNDFAAAEREIRFMFPEVIVE
Query Conservation 
   
 
 




  
    
 



 

     
 

 


 
 
 


 



    
Alig confidence 
















...







































Template Conservation 
   
 
 

  
  
 ...
 



 

     
 

 

    
 


  


     
Template Sequence  VATGRRIIGATRPWEAA. . . PGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAE
Template Known Secondary structure 

SSGGGS
...TTS
SBTTB
S
SS
TT



Template Predicted Secondary structure 








...














Template SS confidence 



























































   84.....90.........100 .........110.........120.........130.........140
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions