 |
| Job Description | P56597 | | Confidence | 12.80% | Date | Thu Apr 26 09:17:35 BST 2012 |
| Rank | 51 | Aligned Residues | 43 |
| % Identity | 19% | Template | d1d8ja_ |
| SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| The central core domain of TFIIE beta
|
| Resolution | UNK |
|
|   |   |
156 | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | |
|
. | . | . | . | . | 190 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | A | K | D | Y | L | N | L | H | I | M | P | T | L | L | E | G | L | T | E | L | C | K | Q | K | P | A | D | P | . |
. |
L | I | W | L | A | D | W | L | L | K | N | N | P | N |
| Query Conservation |   |
  |   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |
|
|   |   |
|   |   |   |   |
|   |   |
| . | . |   |   |   |
|
|   |   |
|   |   |   |
|
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|   |
|
|   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|   |   |   |   |
|
|   |
|   |   |
|   |
|
|   |   |
|
|
|   |
|
|
|
|
| Template Sequence |   |
M | K | T | R | H | Q | R | G | D | T | H | P | L | T | L | D | E | I | L | D | E | T | Q | H | L | D | I | G | L | K | Q | K | Q | W | L | M | T | E | A | L | V | N | N | P | K |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  | T |
|
| S |
| B |
|  |  |  |  |  |  |  |  | T |
| S | S |
|
|  |  |  |  |  |  |  |  | T | T |  |  |  |  |
| T | T |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|