Return to main results Retrieve Phyre Job Id

Job DescriptionP56597
Confidence100.00%DateThu Apr 26 09:17:35 BST 2012
Rank17Aligned Residues147
% Identity29%Templated1be4a_
SCOP infoFerredoxin-like Nucleoside diphosphate kinase, NDK Nucleoside diphosphate kinase, NDK
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20...... ...30.........40.........50.........60.........70.........80.......
Predicted Secondary structure 





..















Query SS confidence 
















. .




























































Query Sequence  IYVEKTLAIIKPDIVDK. . EEEIQDIILRSGFTIVQRRKLRLSPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARH
Query Conservation    




 






  ..   

  
   

 

  
   

 
 
  

    

  
  

  




 




 
 
Alig confidence 
















..




























































Template Conservation 
  
 

 






     
 

  
   

 
   
   

 
 
  

           

  
 


 
 
 
 
 
Template Sequence  ANSERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGL
Template Known Secondary structure 
TT

TT
T


GGGSSSTTGGGSSST
Template Predicted Secondary structure 
























Template SS confidence 















































































   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   88.90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 




























Query SS confidence 









































































Query Sequence  KAISYWLELLGPNNSLVAKETHPDSLRAIYGTDDLRNALHGSNDFAAAEREIRFMFPEVIVEPIPIGQAAKDYL
Query Conservation 


   
 
 




  
    
 



 

     
 

 


 
 
 


 



    
          

Alig confidence 


















...







































..









Template Conservation 


   
 
 




  
 ...
 



  
     
 

 

    
 


  

   
  ..          
Template Sequence  NVVKTGRVMLGETNPADSK. . . PGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFRPEELV. . NYKSCAQNWI
Template Known Secondary structure  T

SSGGG

...TTS

BTTB


SS

GGGS
..



SS
Template Predicted Secondary structure 







...














..





Template SS confidence 









































































   82.......90.........100 .........110.........120.........130.........140 .........150
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions