Job Description P56597 Confidence 100.00% Date Thu Apr 26 09:17:35 BST 2012 Rank 22 Aligned Residues 146 % Identity 23% Template c4di6F_ PDB info PDB header:transferase Chain: F: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: crystal structure of nucleoside-diphosphate kinase from borrelia2 burgdorferi Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																	.	.																																		.	.	.	.	.
Query SS confidence																	.	.																																		.	.	.	.	.
Query Sequence		V	E	K	T	L	A	I	I	K	P	D	I	V	D	K	.	.	E	E	E	I	Q	D	I	I	L	R	S	G	F	T	I	V	Q	R	R	K	L	R	L	S	P	E	Q	C	S	N	F	Y	V	.	.	.	.	.	E	K	Y	G	K	M	F	F	P	N	L	T	A	Y	M	S	S	G	P	L	V	A	M	I	L
Query Conservation																	.	.																																		.	.	.	.	.
Alig confidence																	.	.																																		.	.	.	.	.
Template Conservation
Template Sequence		L	Q	K	T	L	C	I	V	K	P	D	G	V	R	R	G	L	I	G	D	V	V	S	R	F	E	R	V	G	L	K	M	V	A	A	K	M	L	I	V	D	E	S	L	A	K	K	H	Y	L	Y	D	D	I	V	F	R	H	S	E	A	V	W	N	S	L	I	K	F	I	S	N	S	P	V	F	T	F	V	V
Template Known Secondary structure																T	T													T																				S									S													T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.											.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	H	K	A	I	S	Y	W	L	E	L	L	G	P	N	N	S	L	V	A	K	E	T	H	P	D	S	L	R	A	I	Y	G	T	D	D	L	R	.	.	.	.	.	.	.	.	.	.	N	A	L	H	G	S	N	D	F	A	A	A	E	R	E	I	R	F	M	F	P	E	V	I	V	E	P	I	P	I	G
Query Conservation																																									.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.															.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		E	G	V	E	S	I	E	V	V	R	K	L	C	G	A	T	E	P	K	L	A	I	.	.	.	P	G	T	I	R	G	D	F	S	Y	H	S	F	K	Y	S	N	E	K	G	F	S	I	Y	N	V	I	H	A	S	A	N	E	A	D	A	M	R	E	I	P	I	W	F	K	D	N	E	I	L	N	Y	K	R	D
Template Known Secondary structure					T												S	S	T	T	T			.	.	.	T	T	S																	T						S					S	S														G	G	G	S						T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		155	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	A	K	D	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	C	E	H	Y
Template Known Secondary structure		T					T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions