Job Description P20936 Confidence 99.30% Date Fri May 25 10:08:08 BST 2012 Rank 212 Aligned Residues 125 % Identity 14% Template c3nsjA_ PDB info PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin Resolution 2.75 Å

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		576	.	.	.	580	.	.	.	.	.	.	.	.	.			590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610			.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure																.	.																						.	.
Query SS confidence																.	.																						.	.
Query Sequence		C	N	L	R	K	S	S	P	G	T	S	N	K	R	.	.	L	R	Q	V	S	S	L	V	L	H	I	E	E	A	H	K	L	P	V	K	H	.	.	F	T	N	P	Y	C	N	I	Y	L	N	S	V	Q	V	A	K	T	H	A	R	E	G	Q	N	P	V	W	S	E	E	F	V	F	D	D	L	P	P	D	I
Query Conservation																.	.																						.	.
Alig confidence																.	.																						.	.
Template Conservation
Template Sequence		C	E	C	Q	D	S	K	V	T	N	Q	D	C	C	P	R	Q	R	G	L	A	H	L	V	V	S	N	F	R	A	E	H	L	W	G	D	Y	T	T	A	T	D	A	Y	L	K	V	F	F	G	G	Q	E	F	R	T	G	V	V	W	N	N	N	N	P	R	W	T	D	K	M	D	F	E	N	V	L	L	S	T
Template Known Secondary structure					S		T	T	T	B		G	G	G		B	S	S	T	T													S				S	S		S											T	T								B		S		S	S		B												T	T	T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
			652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	R	F	E	I	T	L	S	N	K	T	K	K	S	K	D	P	D	I	L	F	M	R	C	Q	L	S	R	L	Q	K	G	H	A	T	D	E	W	F	L	L	S	S	H	I	P	L	K	G	I	E	P	G	S	L	R	V	R	A	R	Y	S
Query Conservation		.
Alig confidence		.																													.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		G	G	P	L	R	V	Q	V	W	D	A	D	Y	G	W	D	D	D	L	L	G	S	C	D	R	S	P	H	S	.	.	.	.	G	F	H	E	V	T	C	E	L	.	.	.	.	.	.	.	.	.	N	H	G	R	V	K	F	S	Y	H	A	K
Template Known Secondary structure														S	S	S														S	.	.	.	.										.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																															.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.					.	.	.	.	.	.	.	510	.										.	.	.	.	.	.	.	.	520	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions