Job Description P20936 Confidence 100.00% Date Fri May 25 10:08:08 BST 2012 Rank 3 Aligned Residues 306 % Identity 19% Template c3fayA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:ras gtpase-activating-like protein iqgap1; PDBTitle: crystal structure of the gap-related domain of iqgap1 Resolution 2.20 Å

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		720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.		.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.							.	770	.	.	.	.	.	.	.	.		.	780	.	.	.	.	.	.	.	.	.	790	.
Predicted Secondary structure																													.																							.	.	.	.	.	.											.
Query SS confidence																													.																							.	.	.	.	.	.											.
Query Sequence		E	E	E	Y	S	E	F	K	E	L	I	L	Q	K	E	L	H	V	V	Y	A	L	S	H	V	C	G	.	Q	D	R	T	L	L	A	S	I	L	L	R	I	F	L	H	E	K	L	E	S	L	.	.	.	.	.	.	L	L	C	T	L	N	D	R	E	I	.	S	M	E	D	E	A	T	T	L	F	R	A	T
Query Conservation																													.																							.	.	.	.	.	.											.
Alig confidence																													.																							.	.	.	.	.	.											.
Template Conservation
Template Sequence		L	E	A	Y	Q	H	L	F	Y	L	L	Q	T	N	P	T	Y	L	A	K	L	I	F	Q	X	P	Q	N	K	S	T	K	F	X	D	S	V	I	F	T	L	Y	N	Y	A	S	N	Q	R	E	E	Y	L	L	L	R	L	F	K	T	A	L	Q	E	E	I	K	S	K	V	D	Q	I	Q	E	I	V	T	G	N
Template Known Secondary structure																									T	S				S													T	T	T	T		S																								S	S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		969	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.
		792	.	.	.	.	.	.	.	800	.	.	.	.	.		.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.		.	.	.	830	.	.	.	.	.																																.	.	.
Predicted Secondary structure																.																						.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																						.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	A	S	T	L	M	E	Q	Y	M	K	A	T	.	A	T	Q	F	V	H	H	A	L	K	D	S	I	L	K	I	M	E	S	K	Q	.	S	C	E	L	S	P	S	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	N
Query Conservation																.																						.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																						.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	V	I	K	X	V	V	S	F	N	R	G	A	R	G	Q	N	A	L	R	Q	I	L	A	P	V	V	K	E	I	X	D	D	K	S	L	N	I	K	T	D	P	V	D	I	Y	K	S	W	V	N	Q	X	E	S	Q	T	G	E	A	S	K	L	P	Y	D	V	T	P	E	Q	A	L	A	H	E	E	V	K
Template Known Secondary structure												T	T	S																						T	T																							S	S			S	S		S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		1049	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.		.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		E	D	V	N	T	N	L	T	H	L	L	N	I	L	S	E	L	V	E	K	I	F	M	A	S	E	I	L	P	P	T	L	R	Y	I	Y	G	C	L	Q	K	S	V	Q	H	K	W	P	T	N	.	T	T	M	R	T	R	V	V	S	G	F	V	F	L	R	L	I	C	P	A	I	L	N	P	R	M	F	N	I
Query Conservation																																																				.
Alig confidence																																																				.
Template Conservation
Template Sequence		T	R	L	D	S	S	I	R	N	X	R	A	V	T	D	K	F	L	S	A	I	V	S	S	V	D	K	I	P	Y	G	X	R	F	I	A	K	V	L	K	D	S	L	H	E	K	F	P	D	A	G	E	D	E	L	L	K	I	I	G	N	L	L	Y	Y	R	Y	X	N	P	A	I	V	A	P	D	A	F	D	I
Template Known Secondary structure																								T	T	G	G	G	S																				T	T	S																								S	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1129	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.
		918	.	920	.	.					.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.		.	990	.	.
Predicted Secondary structure							.	.	.	.																																																																			.
Query SS confidence							.	.	.	.																																																																			.
Query Sequence		I	S	D	S	P	.	.	.	.	S	P	I	A	A	R	T	L	I	L	V	A	K	S	V	Q	N	L	A	N	L	V	E	F	G	A	K	E	P	Y	M	E	G	V	N	P	F	I	K	S	N	K	H	R	M	I	M	F	L	D	E	L	G	N	V	P	E	L	P	D	T	T	E	H	S	R	.	T	D	L	S
Query Conservation							.	.	.	.																																																																			.
Alig confidence							.	.	.	.																																																																			.
Template Conservation
Template Sequence		I	D	L	S	A	G	G	Q	L	T	T	D	Q	R	R	N	L	G	S	I	A	K	X	L	Q	H	A	A	S	N	K	X	F	L	G	D	N	A	H	L	S	I	I	N	E	Y	L	S	Q	S	Y	Q	K	F	R	R	F	F	Q	T	A	C	D	V	P	E	L	Q	D	K	F	N	V	D	E	Y	S	D	L	V
Template Known Secondary structure		S				T	T																							T	T					S	S		G	G	G																															T	T		S	S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1209	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.
													993	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	R	D	L	A	A	L	H	E	I	C	V	A	H	S	D	E	L	R	T	L	S	N	E	R	G	A	Q	Q	H	V	L	K	K	L	L	A	I	T	E	L	L	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		T	L	T	K	P	V	I	Y	I	S	I	G	E	I	I	N	T	H	T	L	L	L	D	H	Q	D	A	I	.	.	.	.	.	.	.	.	.	A	P	E	H	N	D	P	I	H	E	L	L	D	D	L	G
Template Known Secondary structure			S	S	S																				T					.	.	.	.	.	.	.	.	.			S	T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		1289	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.										.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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